Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3089 ATGGCGTCCGAAGAGCCCGCTGTAGCCGTGGAATCGCCACCAGAACCAGCTGACGTTGAGCCTGCCGAGGAGAATCCGGTCGTCAAGGGGGGTGGCAAGGCCAAGAAAGTTAAGGAGCCAAAACCTAAAAAAGCTGCTGCTCCTAAAGCCCGAAACCCGCCTTCACATCCTCCCTATGAAGAGATGATCAAGGACGCAATTGTGACCTTGAAGGAAAAGACTGGTTCGAGCCAGTATGCGATTACAAAGTTCATCGAAGAGAAACAAAAGCAGCTTCCATCTAACTTCAGGAAGCTTTTGCTATACCATTTGAAGAAGCTTGTGGCTTCTGGAAAGATTGTTAAGGTGAAGGGATCCTTCAAGCTTCCACCAGCTAAGTCATCGGCACCAAAGCCATCTGGGACAGCTTCTCCGGCGAAGAAGAAGCCAGCAGCTGCTAAGCCGAAGCCGAAGCCAAAGCCAAAGCCTAAACCAAAGGCAAAAGCAAAGGCAAAGCCAGCTCCCAAGCCTAAGGAAACCAAGACAACCAAAGCAGCAGCTAAAGCGCCCGCTAAGGCTAAAGCGGCTGCCAAGCCCAAACCCAAAGCGGCTGCGAAACCCAAAGCTGCTCCTGCTAAACCCAAGTCTGCCGCTTCAAAGCCAAAAGCCACTGCTAAGCCAAAGGCAGCTGCCAGGCCAAAGCCCAAGGAGAGGCCTGCCAAGGCTGCAAGGACATCGACGAGGACAACCCCTGGGAGAAAAGCACCTGCTCCTAAACCGGCCCCAAAGAAGGCTGCCGCAGCCAAGAAGGCTCCTGCTAAAAGCGTTAAGCCTAAGAGTGTGAAGTCACCGGCGAAGAAGGCTTCGGCGAAGAAAGGAAAGAAGTGA 867 0.5306 MASEEPAVAVESPPEPADVEPAEENPVVKGGGKAKKVKEPKPKKAAAPKARNPPSHPPYEEMIKDAIVTLKEKTGSSQYAITKFIEEKQKQLPSNFRKLLLYHLKKLVASGKIVKVKGSFKLPPAKSSAPKPSGTASPAKKKPAAAKPKPKPKPKPKPKAKAKAKPAPKPKETKTTKAAAKAPAKAKAAAKPKPKAAAKPKAAPAKPKSAASKPKATAKPKAAARPKPKERPAKAARTSTRTTPGRKAPAPKPAPKKAAAAKKAPAKSVKPKSVKSPAKKASAKKGKK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3089 288 MobiDBLite consensus disorder prediction 144 164 - -
Glsi02g3089 288 CDD H15 53 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3089 288 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3089 288 PANTHER HISTONE H1 37 263 - -
Glsi02g3089 288 MobiDBLite consensus disorder prediction 1 63 - -
Glsi02g3089 288 FunFam Histone H1 50 135 - -
Glsi02g3089 288 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3089 288 PRINTS Histone H5 signature 141 155 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3089 288 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3089 288 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3089 288 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3089 288 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3089 288 MobiDBLite consensus disorder prediction 273 288 - -
Glsi02g3089 288 Gene3D - 51 129 IPR036388 -
Glsi02g3089 288 MobiDBLite consensus disorder prediction 113 288 - -
Glsi02g3089 288 MobiDBLite consensus disorder prediction 29 46 - -
Glsi02g3089 288 SUPERFAMILY "Winged helix" DNA-binding domain 52 127 IPR036390 -
Glsi02g3089 288 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3089 Glsi-ChrGlsi02 79445499 79446461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3089 60 151 Single Myb Histone (SMH) Gene Family AT1G49950 34.409 6.59e-07 48.1