Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g3086 | ATGCATCCTGAACACAGAAGCGACAGTTGTATTGTATCAGATAAGGTAGAAAATTTGGTCAAGATACATGTGAGATCCAGCCTCCACATCCATAATCCTTTTTGCTCTGCGCGTACCGATATCTTCTCGGATACATTAAATATAGTTGGAATGTCTGGGGAAGATTTTGATGGACATGATGCAGGCTATGTGCCTGAGAACCCCAATTTTCCACAAAATCATTCTGATGAACATGATGCAGGAGTGATTGATAACTCTGGGTTTCCTCAAGAACAGTCTGAAGAACAAGATGCAGGCAATGTGGTTGAGGAATACAATCCACCGGAAAATCATTTGGAAGGACTTGATGTTGGAGATTTGCCCAGGAACTCTGATTCTCCCCAAAAGGATAATGATGAACATCATGATGTCAGAGATATGCCTGAGAGTTTTGATTCTGTGCAGAAACAGGAACATGACAATGATTCTAAAGGAAATGAAATAAAAAGGTGGCCGGGGTGGCCTGGAGAGAATGTATTCAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGCCGCAAGGGTGAATTTATCAAGAAAATTACTGAAGAGACCAAAGCTCGTATTAAAATACTTGATGGTCCACCTGGAACCTCAGAAAGAGCTGTAATGGTTTCTGCCAAAGAAGAGCCAGATCGTGACGTACCACCTGCTGTGGATGGCTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGTGATCCTACAGATAGCACATCAGCTGCACGATCAATTGTTACAAGACTTCTAGTAGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATTAAATCCATTCAAGATACCTCTGGTTGTACCATACGTGTCCTTGGATCAGAACACCTGCCAGTTTTTGCCTTGCGAGATGACAGTGTTGTTGAAATACAAGGGGAATCTGCTGGAGTTCACAAGGCAGTTGAACTTATTTCAACTCATCTAAGGAAGTTCTTGGTTGACCGTAGCATAGTTGGAGTATTTGAAACACAGATGCAAATGCCAGATGTTAGAGCTAACCAGAATGTTCCACCACATCAACCTTGGGGTCCTCCTCCTCAAGGGTTTCCAGCTCCTGCTGCTGGTGGACCTCCTTTTGCACCTAATCATCAATATATGCCACCTTCACACCACTATGATAACTATTATCCACCTGCCGACCTGCCTCCTATGGACAAGCACCTTCATCAGGGTCCACCTGCGTATGGAAGGGATACTTCTATGGCATCCAGTGCACAACCACAACAATCTGTTGTGACTAAGGTTACACAGCACATGCAAATTCCACTGTCATATGCAGATGCTGTTATCGGAACATCAGGTGCAAATATCAGCTACATTCGTCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGTGCCAGGGGAGATGACCGTTGAGATAAGTGGGACTGCTTCACAAATACAGACTGCCCAACAACTGGTGCAGAACTTCATGGCTGAAGCTGCAAGCTCGGCACAGGATCATATGGGGGGATCAATTGGCCAAGGTTACAATTCTTATCCTGCTAATGCTCCTGTTTATGCATCTCCACCATCAAGCGCTGGTGGTCATACAGGTCATGCACCTGCTGCTGATTACGGCCCGGTTTATGGCACCAATTATGGCTATTAA | 1698 | 0.447 | MHPEHRSDSCIVSDKVENLVKIHVRSSLHIHNPFCSARTDIFSDTLNIVGMSGEDFDGHDAGYVPENPNFPQNHSDEHDAGVIDNSGFPQEQSEEQDAGNVVEEYNPPENHLEGLDVGDLPRNSDSPQKDNDEHHDVRDMPESFDSVQKQEHDNDSKGNEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRDVPPAVDGLLRVHKQIVNVDRDPTDSTSAARSIVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELISTHLRKFLVDRSIVGVFETQMQMPDVRANQNVPPHQPWGPPPQGFPAPAAGGPPFAPNHQYMPPSHHYDNYYPPADLPPMDKHLHQGPPAYGRDTSMASSAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASSAQDHMGGSIGQGYNSYPANAPVYASPPSSAGGHTGHAPAADYGPVYGTNYGY | 565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g3086 | 565 | ProSiteProfiles | Type-1 KH domain profile. | 439 | 503 | - | - | |
| Glsi02g3086 | 565 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 430 | 510 | IPR036612 | GO:0003723 | |
| Glsi02g3086 | 565 | ProSiteProfiles | Type-1 KH domain profile. | 170 | 237 | - | - | |
| Glsi02g3086 | 565 | MobiDBLite | consensus disorder prediction | 363 | 389 | - | - | |
| Glsi02g3086 | 565 | CDD | KH-I_PEPPER_rpt1_like | 170 | 238 | - | - | |
| Glsi02g3086 | 565 | CDD | KH-I_PEPPER_rpt2_like | 262 | 334 | - | - | |
| Glsi02g3086 | 565 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 162 | 527 | - | - | |
| Glsi02g3086 | 565 | MobiDBLite | consensus disorder prediction | 57 | 164 | - | - | |
| Glsi02g3086 | 565 | Gene3D | - | 170 | 339 | - | - | |
| Glsi02g3086 | 565 | CDD | KH-I_PEPPER_like_rpt3 | 439 | 507 | - | - | |
| Glsi02g3086 | 565 | ProSiteProfiles | Type-1 KH domain profile. | 260 | 329 | - | - | |
| Glsi02g3086 | 565 | MobiDBLite | consensus disorder prediction | 356 | 433 | - | - | |
| Glsi02g3086 | 565 | Pfam | KH domain | 263 | 330 | IPR004088 | GO:0003723 | |
| Glsi02g3086 | 565 | Pfam | KH domain | 441 | 504 | IPR004088 | GO:0003723 | |
| Glsi02g3086 | 565 | Pfam | KH domain | 173 | 225 | IPR004088 | GO:0003723 | |
| Glsi02g3086 | 565 | Gene3D | K Homology domain, type 1 | 426 | 515 | IPR036612 | GO:0003723 | |
| Glsi02g3086 | 565 | MobiDBLite | consensus disorder prediction | 115 | 160 | - | - | |
| Glsi02g3086 | 565 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 162 | 225 | IPR036612 | GO:0003723 | |
| Glsi02g3086 | 565 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 253 | 343 | IPR036612 | GO:0003723 | |
| Glsi02g3086 | 565 | SMART | kh_6 | 259 | 334 | IPR004087 | GO:0003676 | |
| Glsi02g3086 | 565 | SMART | kh_6 | 438 | 508 | IPR004087 | GO:0003676 | |
| Glsi02g3086 | 565 | SMART | kh_6 | 169 | 242 | IPR004087 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g3086 | Glsi-ChrGlsi02 | 79409820 | 79420062 | Dispersed/Wgd |