Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3082 ATGAGGCTGTACCCGCCGGTACCGGTGGATACAAAAGAAGCAGCCGGCGACGACATTCTGCCGGATGGGACTTTGGTGAGGAAGGGGACGAGAGTGGCGTATCATGTTTACGCGATGGGAAGGTCAGAGAAGATATGGGGTAGGGACTGGGCTGAGTTTCGACCAGAACGATGGTTAAAACAGGATGAGGGGACGAAGATGTGGAGGTTTGTGGGGGTGGATTCGTTTAGGTATCCAGTGTTTCAGGCGGGGCCAAGGATCTGTTTGGGTAGAGAAATGGCGTTCTTGCAGATGAAGCGAGTAGTGGCTGGAGTTTTGAGGCGGTTCAGGGTGGTCCCGGCGGTGGCGGAGGGGGTGGAGCCAGTGTATATTGCTCATCGCCCGCATATATCTTCAGAGATGGCTGAGAGATTTTGTGTGAACGAAGAAGAGAAGGCTATGGTGGAATCTATATTGGGTGCCGAAGCCGTTGCATCCTTCGTCTCGGCGGTTTCCAATAAAGTCTTCTCCGACGTAATTATTCCACCTGGTTCCGACCCTGGTCTCCAGCAGCGTTTGTCCCAGCTAGTTCAAGTGTCCCAGTGGACTTATGCCATTTTTTGGCAGGTTGTTAGCTTTAAATCTGGGGGGTCTGCATTGATTTGGGGCGATGGGCACTGTAAAGATCCCAAAGGGGATGCTGCTGGAGGGGCTAATTCCAGAAGGGAGGGTGAACTGAATGGAATTGGAAAGGAGGAGGAGGTGAAAAGGCGGGTGCTCCTTAGGCTTCATGCCTGCTTTGGTGGGTCAAAAGAGGCTAAACATACAAGGCTGGATAAGATATCAGATGTTCACATGTTTTACTTAACTTCTATGTATTATATATTTGGTTTTGATTCACCAAGTGGCCCCGGCAATTCATTTAAGTCTGGTAAGTCAATTTGGGCTTCTGACTCTGCTGGTTGTTTGAATCAATATGAATCAAGATCATTTTTGGGAAGATTGGCTGGGCTCCAAACTGTTGTTTTTGTTCCTCTAAAAACCGGGGTCGTAGAGCTTGGTTCAATCAAATTGATACCAGAAGAAAAGGGTTGTCTGGAGAAAGTTAGAACAACATTCGGGGAATCCAGTTCAGAACAGGTAAAGGTTTATCCTAAAATTTTTGGGCGTGAACTGAGCCTGGGGGATACGAAATCTCAGTCAATAGCTATTAGTTTCTCCCCAAAGGTGGAAGATGATTCTGGTTTTACTTCTGACTCTTATGATGTACAAGCACTAGGGACAAACCATGCTTATGGAAATTCTTCCAATGGAAGCATGGGCGACAATACTGAAGCAAAATTGTTGCCACACTTAAATCAAATGATTATTGGCAATCTAAATGCTCAAGCAGGGGTTTCTTGTCTGGACCTGGGTAATGAAGACTCACCACCTCATCCAGATGAACGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGCCAACGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGCGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAGATGGACAAGGCATCTCTGCTTGGTGATGCCATTTCTTACATCAATGATCTCCAGCTGAAGATCAAGGCGTTGGAAGATGAAAAGGGCATTGTAAACAACAAGGACAAGCTGTTGCGAGATATGGATTTTCAGGCTAGAGAGGATGATGCAGTTGTGAGAGTGAGCTGCCCATTGGATGCTCATCCTGTTTCGGAAGTTGTCAAAACATTCATGGAGCATCAAATTGTACCCCAAGAATCCAGCGTTTCAACTGAAGCCGATAAGGTAATTCATACGTTCTCCATAAGAACTCGAGGAGGTGAGGGTGCTGCTGTACAGTTGAAGGAGAAGCTTGAAGCCTCTCTACTGAAAGGGTGA 1923 0.468 MRLYPPVPVDTKEAAGDDILPDGTLVRKGTRVAYHVYAMGRSEKIWGRDWAEFRPERWLKQDEGTKMWRFVGVDSFRYPVFQAGPRICLGREMAFLQMKRVVAGVLRRFRVVPAVAEGVEPVYIAHRPHISSEMAERFCVNEEEKAMVESILGAEAVASFVSAVSNKVFSDVIIPPGSDPGLQQRLSQLVQVSQWTYAIFWQVVSFKSGGSALIWGDGHCKDPKGDAAGGANSRREGELNGIGKEEEVKRRVLLRLHACFGGSKEAKHTRLDKISDVHMFYLTSMYYIFGFDSPSGPGNSFKSGKSIWASDSAGCLNQYESRSFLGRLAGLQTVVFVPLKTGVVELGSIKLIPEEKGCLEKVRTTFGESSSEQVKVYPKIFGRELSLGDTKSQSIAISFSPKVEDDSGFTSDSYDVQALGTNHAYGNSSNGSMGDNTEAKLLPHLNQMIIGNLNAQAGVSCLDLGNEDSPPHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINDLQLKIKALEDEKGIVNNKDKLLRDMDFQAREDDAVVRVSCPLDAHPVSEVVKTFMEHQIVPQESSVSTEADKVIHTFSIRTRGGEGAAVQLKEKLEASLLKG 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3082 640 SUPERFAMILY Cytochrome P450 1 122 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g3082 640 CDD bHLH_AtAIB_like 487 550 - -
Glsi02g3082 640 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 182 366 IPR025610 -
Glsi02g3082 640 SMART finulus 496 545 IPR011598 GO:0046983
Glsi02g3082 640 PANTHER MYC 167 636 IPR045084 GO:0003700|GO:0006355
Glsi02g3082 640 Pfam Cytochrome P450 1 121 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g3082 640 Coils Coil 529 556 - -
Glsi02g3082 640 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 490 539 IPR011598 GO:0046983
Glsi02g3082 640 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 493 554 IPR036638 GO:0046983
Glsi02g3082 640 Gene3D Cytochrome P450 1 146 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g3082 640 MobiDBLite consensus disorder prediction 468 501 - -
Glsi02g3082 640 FunFam Transcription factor bHLH13 483 557 - -
Glsi02g3082 640 MobiDBLite consensus disorder prediction 461 501 - -
Glsi02g3082 640 Pfam Helix-loop-helix DNA-binding domain 494 540 IPR011598 GO:0046983
Glsi02g3082 640 Gene3D - 483 555 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3082 Glsi-ChrGlsi02 79379483 79383755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3082 134 637 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.953 2.23e-154 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3082 bHLH-MYC_N 5.7e-43 CL0161