Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3079 ATGGAAAGAAACTATCTCAGCAGAGAGAGGCATAGAGAGGACAACTTTGGGTTTGAAGGCCACCATATATGCGGATGGCCAGCTAGAATTTATGCGTGCAGCTTCTGCAGGAGAGAGTTCAGGTCTGCTCAAGCTTTGGGGGGACATATGAATGTTCACAGGAGAGACAGGGCAAGATTGAGATCAGCCTTACCCTCATCCTCATGCCTTCCGGAATCTCCTAAACCTAAACCAAAACCTAACCCTAACTCAGCTCTTCTTTCCTCACCCTCCTCCTCCTCATCATCATCTCCTTTATCTGATGAGGTTTTTCCTTCTGCACTTTATAGCCCTTGTCTAACTTTATCTTCTACACCCTCCTCAGCTACCAGTGAAGGCAAGAAACCCATACCCTCATCTTCCCAGAAGCTTCCTCTTTTGAACCATCAAACTAAGGAAACTAAGAACACAAGGAGGGATTCTGGAATCGAAGAATTGAAGGGGTTTGCAGAGGAGGAACAAAACATGGTTTCCAAGAACTGTGACAATAGAATCACGTTGGAGTTGGGAATAGGATTGCTCCAACACCCAAAGGATAACATAGATTTGGAGCTTCGACTGGGACATTTCTAG 612 0.4542 MERNYLSRERHREDNFGFEGHHICGWPARIYACSFCRREFRSAQALGGHMNVHRRDRARLRSALPSSSCLPESPKPKPKPNPNSALLSSPSSSSSSSPLSDEVFPSALYSPCLTLSSTPSSATSEGKKPIPSSSQKLPLLNHQTKETKNTRRDSGIEELKGFAEEEQNMVSKNCDNRITLELGIGLLQHPKDNIDLELRLGHF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3079 203 MobiDBLite consensus disorder prediction 118 153 - -
Glsi02g3079 203 MobiDBLite consensus disorder prediction 62 100 - -
Glsi02g3079 203 MobiDBLite consensus disorder prediction 118 144 - -
Glsi02g3079 203 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Glsi02g3079 203 Gene3D Classic Zinc Finger 24 76 - -
Glsi02g3079 203 PANTHER OS07G0101800 PROTEIN 18 202 - -
Glsi02g3079 203 Pfam C2H2-type zinc finger 31 55 - -
Glsi02g3079 203 MobiDBLite consensus disorder prediction 84 100 - -
Glsi02g3079 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Glsi02g3079 203 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3079 Glsi-ChrGlsi02 79365317 79365928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3079 26 203 C2H2 Transcription Factor Family AT2G42410 39.153 1.99e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3079 zf-C2H2_6 3e-06 CL0361