Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3078 ATGGAATTCAGCTACCCAGAAGACTCCAAGAGCTCCAGCGAAGAAACTGATCGATCAGAGCAAAATGATGATGCGAGAACTGGCAGATCCTACGAGTGCGTCTTCTGCAAAAGAGGCTTCACCACAGCACAAGCTTTGGGTGGACACATGAATATACACAGGAAAGATAGAGCCAAGACCAAACCCAATTTTCCTCCTTCAAGTTCAAGCAAGGTTGAAGAGAACTATACGGATCTTGGGTTTTATTCTGCAATTTCAAGCCATCCAGGAAATAATCCCTATTCCACTGCTGCTGAGGTAGATAGTAATTATTACAGTCAAATTTCTTTCCCCCCTCCCTCCTATGGTATCAGGCCTTCACATATACAGGATAGTGAGGTGTTGTGTGTAGAAAACCAAAGGGATCGAGAGCTGTTTGGAGAAGATTGGAGGAGGAGTTTGAGCTTGTATGGGAATCCATTATGTGTACGTGAAAATAAAGAGAAGGTAGAAGGTGGCAGTGAAGAGGATGGGCTCGATTTGGAGCTTCGACTGGGTCATCATCCGTAG 549 0.4481 MEFSYPEDSKSSSEETDRSEQNDDARTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKTKPNFPPSSSSKVEENYTDLGFYSAISSHPGNNPYSTAAEVDSNYYSQISFPPPSYGIRPSHIQDSEVLCVENQRDRELFGEDWRRSLSLYGNPLCVRENKEKVEGGSEEDGLDLELRLGHHP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3078 182 Gene3D Classic Zinc Finger 7 94 - -
Glsi02g3078 182 MobiDBLite consensus disorder prediction 7 27 - -
Glsi02g3078 182 Pfam C2H2-type zinc finger 31 55 - -
Glsi02g3078 182 MobiDBLite consensus disorder prediction 159 182 - -
Glsi02g3078 182 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g3078 182 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Glsi02g3078 182 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Glsi02g3078 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Glsi02g3078 182 PANTHER OS07G0101800 PROTEIN 8 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3078 Glsi-ChrGlsi02 79359425 79359973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3078 29 182 C2H2 Transcription Factor Family AT4G17810 31.847 8.76e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3078 zf-C2H2_6 1.6e-05 CL0361