Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3074 ATGGCGAACCCTCAAAAGCCATGGAAGGCGGAGTACGCGAAGTCAGCACGGTCGTCATGCAAGACTTGCAAGAGCACCATTGACAAAGAGAAGTTCCGCCTTGGCAAGATGGTTCAAGCCACCCAATTTGATGGCTTCATGCCGATGTGGCATCATGCTGATTGTATATTGAAGAAAGCAAACCAGATTAAATCAGTTGATGACGTTGAAGGCTTAGAGTTGCTTCGTTGGGAAGACCAGCAGAAGATCAGAAAATACGTAGAGAGTGGTGGGCCATCGAAGTCAAATACTATCAAAGATACAGAATACGGTATTGAAGTTTCACAAACTTCTCGTGCTACATGCAGGCACTGTGGTAAAAAAATAATCAAAGGAGAGGTTCGTATATCTAGTAAACTTGATGGTCAAGGTGCTAGAGGATTGTCCTGGCACCATGCCAAGTGTCTCATGGAATTATCCCCGTCAGTGCAAGTTGAAAAGTTGCCTGGATGGAATAGTCTCTCACCTTCTGATCAATCAGCTGTCAGTGCCATAGCTAAGAAGGTTCCTTCTGTGAAGAGAGGTGGTGCGGACATTGAGGCTCAAGAGGTTAAGGAAGTTACACGTGAATCAACTTCCAAAGCTGGCACAAAACGTAGGAAGGATGTCAAGGGTGACCAGAAGTCAAAAGTTGCTAAGGCTGAGGGAGATGTGTCTGAGGGCAGGGCAGCATCAGTGAAAAATGCTAATGACTCAAGGAAAGCATCTGATATGGAGAATAGACTGGAGGCGCAGACCAAAGAACTCTGGTCTCTGAAAGATGATCTTAAAAAGCATGTGACAACTGCTGAGTTACGTGTAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGAGATCGCTGTGCCGATGGAATGATGTTTGGAGGACTTGGTTGTTGCCCAATCTGTTCTGGTTGTCTGCGCTATTCTGGAGGAATGTACCGGTGCCATGGATACGTCTCTGCCTGGAGCAAATGTTCCTATTCTACCCGTGAACCAGTACGGCTTAGAGGGAAGTGGAAAGTCCCAGAGGGAACAAACAATCAATACCTTAAAAAGTGGTTCAAATCACAAAAGGCTGAGAAACCGGTTAGGATATTGCCTCCACCATCATCAACTTCTGAAAGTCAAATAATTGGTTGCCAGTATCAATCATCGAACAGTGAAAATCTGGGAGACTTGAAAGTTGCTATCTCTGGATTTCCTAAAGAATCTATTGTGGAGTGGAAACGCAAAATTGAGGGGGTTGGTGGTGTGCTTCATGCAAAAGTAAAGAAAGAAACTAATTGCTTGGTGGTGATTGGAAAGCTGGACGATGGAGAAGTTGAGATTCGGAAGGCAAGGAGAATGAAAGTACCTATAGTCAGAGAGGATTATCTGGTTGACTGTTTAGAAAGAAAGAAGAAGCTTCCATTGGACTTGTACAAAGTTGAAGCAACTGGTGAGGGCTCTAGCATGGTCACAATCAAAGTGAAAGGTCGAAGTGCTGTTCATGAGGCCTCTGGCCTACAGGATTGTGGCCACATTCTTGAGGAAGGGAAAAGCATATTTAATACAACTTTGAATATGTCTGATTTATCTACTGGAGTTAACAGCTACTACATTCTCCAAATAATTCAAGAGGATAAGGGGACAGATTGCTATGTATTTCGTAAATGGGGTCGAGTGGGGAATGACAAGATTGGAGGAAGTAAACTGGACGAGATGTCAAAAGAAGATGCAATCTCTGAATTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCTTGGGAAAAAAAGGATTTCCAGAAGCAACCAGGAAGATTCTTCCCATTGGATATTGATTATGGGGTTAACAAACAGGTCTCAAAGAAAAATAAAAATGATGCTGACAGCAATCTGGCCCCTCCATTAATAGAATTGATGAAGATGCTTTTTAATGTGGAAACGTACAGGGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGTAACATCCAAAAGGGGTTTGAAGCTTTAACAGATATACAGAATCTGTTAAATACTAATAATTCCGATCCTTCAGTCAGAGAAAGCTTGCTTATTGATGCCAGCAATCGGTTTTTCACTGTGATCCCTTCTATTCATCCACATATTATAAGGGATGAGGAGGATTTTAAGTTAAAGGTGAAAATGTTAGAATCCCTTCAAGACATTGAAATAGCTTCAAGATTGGTTGGATTTGATGTTGATAGTGATGACTCCATTGATGATAAGTATAAGAAGCTCCGCTGTGATATTTCTCCACTTCCTCATGACAGTGAAGATTATCATCTGATTGAAAAGTTTCTTCAGACTACTCATGCCCCTACACATACGGATTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAATTTGATAAGTTTGCCCCTTACAGAGAAAAACTTGGTAACAGAATGCTCCTATGGCACGGTTCTAGGTTGACAAATTTTGTGGGCATACTTAACCAAGGACTTAGAATTGCACCTCCTGAAGCCCCAACAACTGGCTATATGTTTGGCAAAGGGTTATACTTTGCTGACCTGATCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTGATGCTTCTGAGTGAAGTTGCCCTAGGAAACATCTATGAGCTCAAGAATGCTAAGTATATGGAAAAAGCTCCGGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAGTACCTAATCAATCAGAATTTGTAAAGTGGAGGGATGACGTCATTGTTCCTTGTGGCAAACCCGTGCCATCAAAAGTCAAGACTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAGTTCTTGTTGAAGGTGAGGTTCCATCACAAGAGATGA 2970 0.4209 MANPQKPWKAEYAKSARSSCKTCKSTIDKEKFRLGKMVQATQFDGFMPMWHHADCILKKANQIKSVDDVEGLELLRWEDQQKIRKYVESGGPSKSNTIKDTEYGIEVSQTSRATCRHCGKKIIKGEVRISSKLDGQGARGLSWHHAKCLMELSPSVQVEKLPGWNSLSPSDQSAVSAIAKKVPSVKRGGADIEAQEVKEVTRESTSKAGTKRRKDVKGDQKSKVAKAEGDVSEGRAASVKNANDSRKASDMENRLEAQTKELWSLKDDLKKHVTTAELRVMLEANGQDSTGSELDLRDRCADGMMFGGLGCCPICSGCLRYSGGMYRCHGYVSAWSKCSYSTREPVRLRGKWKVPEGTNNQYLKKWFKSQKAEKPVRILPPPSSTSESQIIGCQYQSSNSENLGDLKVAISGFPKESIVEWKRKIEGVGGVLHAKVKKETNCLVVIGKLDDGEVEIRKARRMKVPIVREDYLVDCLERKKKLPLDLYKVEATGEGSSMVTIKVKGRSAVHEASGLQDCGHILEEGKSIFNTTLNMSDLSTGVNSYYILQIIQEDKGTDCYVFRKWGRVGNDKIGGSKLDEMSKEDAISEFKRLFFEKTGNPWEAWEKKDFQKQPGRFFPLDIDYGVNKQVSKKNKNDADSNLAPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLNTNNSDPSVRESLLIDASNRFFTVIPSIHPHIIRDEEDFKLKVKMLESLQDIEIASRLVGFDVDSDDSIDDKYKKLRCDISPLPHDSEDYHLIEKFLQTTHAPTHTDWSLELEEVFSLEREGEFDKFAPYREKLGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPTTGYMFGKGLYFADLISKSAQYCYTDKKNPVGLMLLSEVALGNIYELKNAKYMEKAPEGKHSTKGLGKKVPNQSEFVKWRDDVIVPCGKPVPSKVKTSELMYNEYIVYNTAQVKMQFLLKVRFHHKR 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3074 989 MobiDBLite consensus disorder prediction 196 253 - -
Glsi02g3074 989 Coils Coil 241 268 - -
Glsi02g3074 989 ProSiteProfiles SAP motif profile. 270 304 IPR003034 -
Glsi02g3074 989 CDD WGR_PARP1_like 519 624 - -
Glsi02g3074 989 Pfam Poly(ADP-ribose) polymerase catalytic domain 784 985 IPR012317 GO:0003950
Glsi02g3074 989 SMART WGR_cls 529 612 IPR008893 -
Glsi02g3074 989 SUPERFAMILY BRCT domain 400 489 IPR036420 -
Glsi02g3074 989 Gene3D - 308 368 IPR038650 -
Glsi02g3074 989 ProSiteProfiles PARP catalytic domain profile. 764 989 IPR012317 GO:0003950
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 2 102 - -
Glsi02g3074 989 Gene3D BRCT domain 394 491 IPR036420 -
Glsi02g3074 989 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 180 - -
Glsi02g3074 989 ProSitePatterns Zinc finger poly(ADP-ribose) polymerase (PARP)-type signature. 20 55 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 SMART zf_PARP_3 11 88 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 SMART zf_PARP_3 106 180 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 640 774 IPR036616 GO:0003950
Glsi02g3074 989 Gene3D - 629 773 IPR036616 GO:0003950
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 396 498 - -
Glsi02g3074 989 SUPERFAMILY WGR domain-like 497 622 IPR036930 -
Glsi02g3074 989 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 103 183 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 CDD parp_like 640 984 - -
Glsi02g3074 989 Pfam BRCA1 C Terminus (BRCT) domain 405 476 IPR001357 -
Glsi02g3074 989 Pfam PADR1 (NUC008) domain 298 347 IPR012982 GO:0008270
Glsi02g3074 989 Pfam WGR domain 530 607 IPR008893 -
Glsi02g3074 989 SUPERFAMILY ADP-ribosylation 773 988 - -
Glsi02g3074 989 PANTHER DNA LIGASE 102 987 - -
Glsi02g3074 989 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 100 - -
Glsi02g3074 989 Gene3D - 2 97 IPR036957 GO:0003677|GO:0008270
Glsi02g3074 989 Gene3D - 774 989 - -
Glsi02g3074 989 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 8 91 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 242 381 IPR047572 GO:0008270
Glsi02g3074 989 SMART PADR1_2 296 349 IPR012982 GO:0008270
Glsi02g3074 989 Gene3D - 234 307 - -
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 774 989 - -
Glsi02g3074 989 Gene3D - 98 189 IPR036957 GO:0003677|GO:0008270
Glsi02g3074 989 ProSiteProfiles PARP alpha-helical domain profile. 639 757 IPR004102 GO:0003950
Glsi02g3074 989 PIRSF NAD_ADPRT 1 989 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Glsi02g3074 989 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 11 87 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 106 176 IPR001510 GO:0003677|GO:0008270
Glsi02g3074 989 Pfam Poly(ADP-ribose) polymerase, regulatory domain 640 770 IPR004102 GO:0003950
Glsi02g3074 989 SMART BRCT_7 400 479 IPR001357 -
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 308 369 - -
Glsi02g3074 989 ProSiteProfiles BRCT domain profile. 398 489 IPR001357 -
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 235 307 - -
Glsi02g3074 989 ProSiteProfiles WGR domain profile. 518 617 IPR008893 -
Glsi02g3074 989 MobiDBLite consensus disorder prediction 196 230 - -
Glsi02g3074 989 FunFam Poly [ADP-ribose] polymerase 632 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3074 Glsi-ChrGlsi02 79330909 79339897 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3074 02 79330909 79339897 Glsi11g0722 11 4559837 4560878 CCT
Glsi02g3074 02 79330909 79339897 Glsi02g3074 02 79330909 79339897 ECH