Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3064 ATGAGCTCCTCGGAGACCAAGTCTTTACCATTTAGATCTAAGAAGCCCCATCTCGACCACTCAGCCTCAAAATCCGAATCCCCAGACTCTATTTCTTTGAGCTCCAAAACCCCAGAGAAGGCTCCACAGCTCTCTCGCCGTTCACGAAACCGCGGCGTTGCGCTCTCCATCAAAGAAATCAAGAAAGTCGCTCAAAGCCTTCAGGAACGGAATCACCAGCAACAAAATAATGATCAGACGGGGCAGATCAAATCTGCCAGAAGGAAGATTGCAATTTCTTCCGCCGAAAGTACACCCCGTAAATCCAAGACCGTTACTGATGAGCCCGTCAAGCTTCCGGAAAAGTATGAAATTTTAGGTGAGTTCTTCGACAGCTTGGATAGCTCGATTCGATTGCTGCATCTGAAAGGTTCAACAACAACTTTCACGAATATCTGCCCTAAGATTGAATGTTTAACTGATAGGAGGTTTACCCATGGTCATCTGGCCCAGTTGAAATATATTTTCCCTGAGGCGGTTGTTATAAAGAAGGTACTCAGGTTTGATGAACGGACAAGTTGTATGAAGCCAGATCTCCATGTTAAAATAAATTCCGAAGCAATAGAATCTGATGCAAAGTTTCTCTCTGAAGGAGGCAGTATGTCTGTGAGGAAGTTATTTCGGACACGGCTGAGAGATTTTTATAAATCACATCCCGAGGGTGACGAAATTCCAGAAGAAATACTACCTGAGCCATTCAATCACCCTAAGCAAGACCATCTTTTGGAAAAATTGAGAATTCCCTCCTCTTCATTTGCTTCAATGAGATCATATGATACATTTGCACCTCATCTTCCAGCTGTAGCACCTGCATGCAGGCAGGGCAATGCCATTGCAGATAATTCAGAGCCTTCTAAGGGAGAAGAGAACTTATCAGCACCCGTCAAGATGTCAAATGAAGCACTTCATCAGCAACCAGCAGTAGCCACTCATGTGTCTCAATCTTTTAGAAGGCACTTTTCTCAGAAATATATGAGAAATGAGGTAGACAATGCAAAGCAAAAGTTACCATCGGATTCATTCCAACCCCAGGCTGATCCAAATTTGGAGTCAAGCCTTAAGAAAGATTCAACAGGTGTAGATAGTGGATCTGATCCTAATATATGCCCCAAAATATGTGCGTCTCCAGATTGTCTCACATTATCTGGTGCTCCACCTGCCACTCCAAATAAAAGCGTTGAGTATGCAGACAAGGAAGATGGGTCTCTCAGAAACATTGCTGCCACGTCTACACCAGTTAAACTTGCTTCTACCCCATCTAGGCTGATGACTGTTACACCTTCATTGCCTCCGCCTAAGAGATGTTACATGAGCCCTGATGACAGCTCTTCAAGCTCACCAAACAAGTTGGTTAGGCGGCCACCTCGTTCAAGGTCATTGAAATTTGACACTCCAGTGAAAAATGAGAGGGCAGACAATGAATCTGATGATGCTGGTGGCTTATCAATTGATGATGATATTTTTGATATTCTCCCAGAGAATCTTCTCCAATCGATTAGAGAAAAGGAGAGACTGGCAATGGAGGAAAGAAATCCGGCCATCTCACAAGCAAAGAGACGGCAAAAAATGATTGCCAGCCTCCCTAAACTCTTTAACATGATTCATCTCTTGATTCATTCAATTAACCGTTCCGTTATCACAAAAGAGGAGCTTCTGAGCAAGATAATCTCAAGCCATTGTGATATTGTTGACAGAAGAGAAGTTGAAGAGCAGCTGAATTTGTTGCTAGAAGTAGTTCCAGAATGGATTTCTGAAAAGTTGGCATCTAGCGGGGATTTGCTATTCTGCATAAATAAAATGTTGAACCCAGAGACCATACGATCACAGCTTGAAGAAGCAAAGTGA 1884 0.4321 MSSSETKSLPFRSKKPHLDHSASKSESPDSISLSSKTPEKAPQLSRRSRNRGVALSIKEIKKVAQSLQERNHQQQNNDQTGQIKSARRKIAISSAESTPRKSKTVTDEPVKLPEKYEILGEFFDSLDSSIRLLHLKGSTTTFTNICPKIECLTDRRFTHGHLAQLKYIFPEAVVIKKVLRFDERTSCMKPDLHVKINSEAIESDAKFLSEGGSMSVRKLFRTRLRDFYKSHPEGDEIPEEILPEPFNHPKQDHLLEKLRIPSSSFASMRSYDTFAPHLPAVAPACRQGNAIADNSEPSKGEENLSAPVKMSNEALHQQPAVATHVSQSFRRHFSQKYMRNEVDNAKQKLPSDSFQPQADPNLESSLKKDSTGVDSGSDPNICPKICASPDCLTLSGAPPATPNKSVEYADKEDGSLRNIAATSTPVKLASTPSRLMTVTPSLPPPKRCYMSPDDSSSSSPNKLVRRPPRSRSLKFDTPVKNERADNESDDAGGLSIDDDIFDILPENLLQSIREKERLAMEERNPAISQAKRRQKMIASLPKLFNMIHLLIHSINRSVITKEELLSKIISSHCDIVDRREVEEQLNLLLEVVPEWISEKLASSGDLLFCINKMLNPETIRSQLEEAK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3064 627 SUPERFAMILY "Winged helix" DNA-binding domain 109 246 IPR036390 -
Glsi02g3064 627 Gene3D - 498 627 IPR038090 -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 25 41 - -
Glsi02g3064 627 PANTHER DNA REPLICATION FACTOR CDT1 12 627 IPR045173 GO:0003677|GO:0030174|GO:0071163
Glsi02g3064 627 Coils Coil 57 77 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 451 465 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 347 380 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 10 24 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 1 108 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 42 56 - -
Glsi02g3064 627 CDD Cdt1_c 503 624 IPR032054 -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 469 490 - -
Glsi02g3064 627 SMART CDT1_2 112 244 IPR014939 -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 394 418 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 347 377 - -
Glsi02g3064 627 Pfam DNA replication factor Cdt1 C-terminal domain 507 599 IPR032054 -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 430 493 - -
Glsi02g3064 627 MobiDBLite consensus disorder prediction 67 100 - -
Glsi02g3064 627 FunFam CDT1-like protein a chloroplastic 497 627 - -
Glsi02g3064 627 CDD Cdt1_m 94 253 IPR014939 -
Glsi02g3064 627 Pfam DNA replication factor CDT1 like 112 204 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3064 Glsi-ChrGlsi02 79252698 79256741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3064 422 625 Core DNA Replication Machinery Family AT2G31270 56.338 6.13e-63 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3064 02 79252698 79256741 Glsi11g0727 11 4594323 4601665 CCT
Glsi02g3064 02 79252698 79256741 Glsi02g3064 02 79252698 79256741 ECH