Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3058 ATGCCTCTTCTCATTCCTTTCTCTGTCTCATGCGGTTCTGCGAGTTCTCGTCTGAAATTTAGAGATCAGTTTGTTATGCTTAGAGATGAGTTAACGCCTGCAGTTGCAGGGTTGAACGGTATTGACCATCTATTCTGGTCTGATAGCCTGGTGCAACTGTGTTTTGTTCAACGCTGGTATTGCTATGCAATGATAGCTTTTCCTTGTGTGATTGTTATTAAGGCTTACAAGTTTTTGAAGTTCTTAACTCTAATCTACAGCGCTCAAAAGACTTTTCTTGTTTTCAGGTTTTGGTTGCCTGTTCTTGCTCATGTGGAAGTTGCCCATTGCAAGATCACGGGATGTGTGATATCTTCTGTTCTTTGTTGTGATTGTACTCTGATTCATGTTAGAGAATTACGGCTTGTTATTATCAGAAAGTTGCATTGTCTGCCCAATATAAATGTCAGAGTCAAGCCAGAATTCATGGGCAGCAGCAACAAAATGGCAGATGACTCAAAGAAAAAGGTAAAGGAAGAGGAACCAAAAGAAACCAAGTACAGAGGAGTACGACGGCGTCCATGGGGAAAGTTTGCAGCTGAGATTCGAGACTCAAACAGGCATGGAGCCCGCTTGTGGCTTGGAACTTTTAACACTGCTGAGGAAGCAGCCAGAGCTTATGATCGTGCTGCCTATGATATGAGAGGTGCTTCAGCCATTCTCAACTTTCCAAAAGAACATTATGCTTTAAGCAATGGGGGAACTCCTCACCCCTCCTTTTCATCATGTGCTTCATCGTCTTCTTCAACAGTTGAAGGCCAGAGTGGAAAACAAGTCTTTGAATTCGAGTGTTTGGATGATAAGTTATTAGAGGAACTTCTTGATTATGATGATGAGAATGCGAGCAAGAAGGAGTAA 897 0.4225 MPLLIPFSVSCGSASSRLKFRDQFVMLRDELTPAVAGLNGIDHLFWSDSLVQLCFVQRWYCYAMIAFPCVIVIKAYKFLKFLTLIYSAQKTFLVFRFWLPVLAHVEVAHCKITGCVISSVLCCDCTLIHVRELRLVIIRKLHCLPNINVRVKPEFMGSSNKMADDSKKKVKEEEPKETKYRGVRRRPWGKFAAEIRDSNRHGARLWLGTFNTAEEAARAYDRAAYDMRGASAILNFPKEHYALSNGGTPHPSFSSCASSSSSTVEGQSGKQVFEFECLDDKLLEELLDYDDENASKKE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3058 298 MobiDBLite consensus disorder prediction 161 178 - -
Glsi02g3058 298 SUPERFAMILY DNA-binding domain 179 238 IPR016177 GO:0003677
Glsi02g3058 298 FunFam Ethylene-responsive transcription factor 2 178 238 - -
Glsi02g3058 298 Pfam AP2 domain 178 229 IPR001471 GO:0003700|GO:0006355
Glsi02g3058 298 ProSiteProfiles AP2/ERF domain profile. 179 237 IPR001471 GO:0003700|GO:0006355
Glsi02g3058 298 CDD AP2 180 237 IPR001471 GO:0003700|GO:0006355
Glsi02g3058 298 Gene3D AP2/ERF domain 178 238 IPR036955 GO:0003700|GO:0006355
Glsi02g3058 298 MobiDBLite consensus disorder prediction 159 178 - -
Glsi02g3058 298 MobiDBLite consensus disorder prediction 247 268 - -
Glsi02g3058 298 PANTHER DNA-BINDING DOMAIN 164 293 IPR044808 GO:0003700|GO:0009873
Glsi02g3058 298 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700|GO:0006355
Glsi02g3058 298 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700|GO:0006355
Glsi02g3058 298 SMART rav1_2 179 243 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3058 Glsi-ChrGlsi02 79220162 79224659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3058 176 288 AP2-EREBP Transcription Factor Family AT3G23230 61.017 2.49e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3058 AP2 1.4e-15 CL0081