Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3057 ATGTTGCAATGGAAGCAGGGAGTAGCAGAGCAAGTAAGTCATGGACCCTTCAAGAAAAGGAGCTCGGGAGCCTTTGAAACTGCCGAGGAGGCTGCCAGGGCTTATGATACTGCTGCTGCTTTTCATTTTCGAGGTCACAAAGCCATTCTCAACTTCCCTAATCACTACCCATTTCATAACCCTAACTCTTCTTCTCCTTCTTCGTATTGTGGTGAGGACCATGTGAAAGCGACATCCTCAACACCACCCCAAGGAAACCATACTTCAGAATTGGAATACTTGGACAATAAGTTGCTGAACAAACTCCTTCATCCACAACTTCATATTCATAGGCGGTTGGGTAGGGAAGAGAAATGTGAAGGGAAAAGCAGAGGGATACGTAAGAGGCCATGGGGTAAGTTTGCAGCAGAAATACGTGACCCCACTAGAAATGGTATGCGCCTTTGGCTGGGAACCTTTCAAACAGCGGAGCAGGCTGCTAGGGCATATGATAGTGCTGCTTTCAACTTTAGGGATCACAAGGCCATTCTCAACTTCCCAAATGGTTACCAATCTCATCATCATATTCAAACCTCTTTGTCAATTGGTCTGCCTTCTATTTCTTCTTCTCTTCCATTGCTGCAGCTTCAAGTTAAGGCTTTCATCAAGAGGGCTACAAGGTGA 663 0.457 MLQWKQGVAEQVSHGPFKKRSSGAFETAEEAARAYDTAAAFHFRGHKAILNFPNHYPFHNPNSSSPSSYCGEDHVKATSSTPPQGNHTSELEYLDNKLLNKLLHPQLHIHRRLGREEKCEGKSRGIRKRPWGKFAAEIRDPTRNGMRLWLGTFQTAEQAARAYDSAAFNFRDHKAILNFPNGYQSHHHIQTSLSIGLPSISSSLPLLQLQVKAFIKRATR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3057 220 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Glsi02g3057 220 SUPERFAMILY DNA-binding domain 8 54 IPR016177 GO:0003677
Glsi02g3057 220 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Glsi02g3057 220 Gene3D AP2/ERF domain 3 54 IPR036955 GO:0003700|GO:0006355
Glsi02g3057 220 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 MobiDBLite consensus disorder prediction 62 89 - -
Glsi02g3057 220 ProSiteProfiles AP2/ERF domain profile. 122 180 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Glsi02g3057 220 PANTHER DNA-BINDING DOMAIN 23 87 IPR044808 GO:0003700|GO:0009873
Glsi02g3057 220 SMART rav1_2 7 59 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 ProSiteProfiles AP2/ERF domain profile. 1 53 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Glsi02g3057 220 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3057 Glsi-ChrGlsi02 79218260 79219363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3057 120 183 AP2-EREBP Transcription Factor Family AT3G23230 76.562 7.11e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3057 AP2 5.4e-11 CL0081