LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3056	ATGAGTTCATCAAATCTTGAGCACCCAGATAGGGTAATCTGGGAAGAGCCTTCAGACACTTCGTTTGAATCTTATTTTTCAAGCAGTGGTGGTGATCTTCATGATGGTACTCTGCTTGATTGTCTCTCCTTCGATATGGTGGACTACGCCACAGATCCTAATGCACTAACCAGTAAGAATGATAACAAGAACGAGGCAAAGGAAATGGTGCGTTCCGAAAGCAAACAAGTGGAGGCTAACAAAGAGAAATCATATATAGGGGTGAGGAAGAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACCAGGAATGGCAGTCGGGTTTGGCTTGGAACGTTTGAAAGCGCAGAGGCAGCTGCTTTAGCTTATGATCAAGCAGCATTTAGCATGAGAGGTCCAACAGCTGTTCTTAATTTTCCAGTGAAAACGGTGAAGGAATCTTTGAAAGACATCAATTATAGTTATAGCAAAGGGTATTCGCCTGCATTAGCACTGAAGGAAAGGCACTACATCCAGCGAAGATTGTCGTCGGCAAAACCTAGGAAAAGCAAAGGGAAGCAGGAATCAGAGGAACCAAGTGTGGTGGTGCTTGAAGACTTGGGAGTTGAATACCTCGAGCAACTTCTCACCTTCTCGGATCAAACTGCAAGTGCAAGCCGTAGCTACTGTGAACATTATTAA	687	0.4454	MSSSNLEHPDRVIWEEPSDTSFESYFSSSGGDLHDGTLLDCLSFDMVDYATDPNALTSKNDNKNEAKEMVRSESKQVEANKEKSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFESAEAAALAYDQAAFSMRGPTAVLNFPVKTVKESLKDINYSYSKGYSPALALKERHYIQRRLSSAKPRKSKGKQESEEPSVVVLEDLGVEYLEQLLTFSDQTASASRSYCEHY	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3056	228	Gene3D	AP2/ERF domain	83	144	IPR036955	GO:0003700\|GO:0006355
	Glsi02g3056	228	SUPERFAMILY	DNA-binding domain	84	143	IPR016177	GO:0003677
	Glsi02g3056	228	CDD	AP2	83	143	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3056	228	ProSiteProfiles	AP2/ERF domain profile.	84	142	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3056	228	Coils	Coil	63	83	-	-
	Glsi02g3056	228	Pfam	AP2 domain	84	134	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3056	228	SMART	rav1_2	84	148	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3056	228	FunFam	Ethylene-responsive transcription factor 2	83	144	-	-
	Glsi02g3056	228	PANTHER	DNA-BINDING DOMAIN	63	215	IPR044808	GO:0003700\|GO:0009873
	Glsi02g3056	228	PRINTS	Ethylene responsive element binding protein signature	108	124	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3056	228	PRINTS	Ethylene responsive element binding protein signature	85	96	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3056	Glsi-ChrGlsi02	79213290	79213976	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3056	75	219	AP2-EREBP Transcription Factor Family	AT3G23240	59.184	7.40e-54	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi02g3056		AP2	7.5e-14	CL0081