Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3055 ATGTCTTCCTGTATGTTTGAGCACCCAGAATGGGAGTTCTGGCAGGAGGATCTTTCTGATACTTTCTTGGAATGTTTTTCAAGCAACCAAGTTCGTGAAGACCCTTTCCATGATTCTCTTGCCTTCGACATGGTGGATTGTACAGATCTACAAGCACCATCCTACGGGAATGAGTTTGACTCCGATTCAAAGCAAGCTGCGGGAAATTCGGAAATCAAAGAAGAGAAGAAGAGTAAGGAGAAATCATACATAGGGGTGAGGAAGAGGCCATGGGGAAAATTTGCCGCTGAGATAAGAGATACAACCAGAAATGGAGCTCGGGTTTGGCTTGGAACATTTGATAGTGCAGAGGCAGCTGCTTTAGCGTATGATCAAGCTGCATTTAGCATGAGAGGCGCAAAGGCTGTTCTTAATTTTCCGATGGAGAGAGTGAAGGAATCTCTGCAAGAGATCAATTATGGTTGGCGCAAAGGGTGTTCGCCTGCTTTGGAACTCAAACAAAGACACTGCATCCAAAGAAAATTGTCATCAAAGGCTAGGAAAAGCAAAAACAAACAGAAATCAGAGGCACCGACTGTAGTGGTGCTTGAGGATTTGGGAGATGAATATCTAGAGCAACTTCTGAGCATGTCAAGCCCCAGCCCTAGCTATTTCTAA 657 0.446 MSSCMFEHPEWEFWQEDLSDTFLECFSSNQVREDPFHDSLAFDMVDCTDLQAPSYGNEFDSDSKQAAGNSEIKEEKKSKEKSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDSAEAAALAYDQAAFSMRGAKAVLNFPMERVKESLQEINYGWRKGCSPALELKQRHCIQRKLSSKARKSKNKQKSEAPTVVVLEDLGDEYLEQLLSMSSPSPSYF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3055 218 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 CDD AP2 83 140 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Glsi02g3055 218 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Glsi02g3055 218 FunFam Ethylene-responsive transcription factor 2 81 142 - -
Glsi02g3055 218 PANTHER DNA-BINDING DOMAIN 64 209 IPR044808 GO:0003700|GO:0009873
Glsi02g3055 218 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3055 Glsi-ChrGlsi02 79205682 79206338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3055 35 217 AP2-EREBP Transcription Factor Family AT3G23240 49.730 1.73e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3055 AP2 1.5e-14 CL0081