Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3054 ATGGAGGGGAAGAGAGATGTGAAGGGAAAAGCAGAGTTTCGGTATAGGGGGATCCGTAAGAGGCCATGGGGTAAGTTTGCAGCAGAAATACGTGACCCCACCAGAAACGGGATGAGCCTTTGGCTGGGAACCTTTGACACAGCGGAGCAGGCTGCTAGGGCTTATGACACTGATGGTTTCAACTTCAGGGGTCACAAGCCCATTCTCAACTTCCCAAATGACTACCAATCTCATCATCATATTCAAACCTCTTTGTCAATTGGTCTGCCTTCTATTTCTTCTTCTTGTTCTTCCATTGGTGCAGCTTCAAGTCAGGGCTTTGTGAAAGTGGGTTCATCAGGAGGACTACAAGGTGATCCTTTGGAGTTGGAATACTTGGATAACAAGCTGTTGGACTATCTTCTTCAGGCCCCTCATGATAGGCAACACTAA 432 0.4722 MEGKRDVKGKAEFRYRGIRKRPWGKFAAEIRDPTRNGMSLWLGTFDTAEQAARAYDTDGFNFRGHKPILNFPNDYQSHHHIQTSLSIGLPSISSSCSSIGAASSQGFVKVGSSGGLQGDPLELEYLDNKLLDYLLQAPHDRQH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3054 143 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700|GO:0006355
Glsi02g3054 143 Pfam AP2 domain 14 56 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 SUPERFAMILY DNA-binding domain 14 73 IPR016177 GO:0003677
Glsi02g3054 143 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Glsi02g3054 143 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Glsi02g3054 143 PANTHER DNA-BINDING DOMAIN 12 93 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3054 Glsi-ChrGlsi02 79193552 79193983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3054 14 137 AP2-EREBP Transcription Factor Family AT3G23230 50.806 1.18e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3054 AP2 1e-10 CL0081