Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3053 ATGGAGGGGAAGAGAAATGTGAAGGGAAAAGCGGAGTTTCGGTATAGAGGGATACGTAAGAGGGCATGGGGTAAGTTTGCAGCAGAAATACGTGACCCCACCAGAAATGGGATGCGCCTTTGGCTGGGAACCTTTGACACTGCAGAGCAGGCTACTAGGGCTTATGATACTGCTGCTTTCAACTTCGGGGTCACAAGGCCATTCTCAACTTCCCAAATGACTACCAATCTCATCATCATATTCAAACCTCTTTCTTCAAGTGAGGGCTTTGTGAAAGTGGGTTCATCAGGAGGACTACAAGGTGATCTTTTGGAGTTGGAATACTTGGATTATGGTCAACTTCAAGTCTTCAACCTTGTTAACAAATCAGATGAGATTGGGTACAAAGGGATTCGAAAGAGGCCTTGGGGTAAGTTTGCAGCTAAGATTCGAGCCCCTTCAATAAAAGGGACTCGTTTATGGCTGGGAGCCTTTGAAACTGCCGAGGAGGTTGCCAGGGTTTATGATACTGCTGCTTTTCATTTTCGAGGTCACAAAGCCATTCTCAACTTCCCTAATCACTACTCACTTCATAACCCTAACTTCTTCTCCTTCTTCGTATTATGGTCAGGACCTTGTGAAAGCGGCATCCTCAACACCACCCCAAGGAAACCATACTTTAGAATTGGAATACTTGGACAAGAAGTTGCTGGACGAACTGCTTCACCCACAACTTCATTTTCTTAG 726 0.4532 MEGKRNVKGKAEFRYRGIRKRAWGKFAAEIRDPTRNGMRLWLGTFDTAEQATRAYDTAAFNFGVTRPFSTSQMTTNLIIIFKPLSSSEGFVKVGSSGGLQGDLLELEYLDYGQLQVFNLVNKSDEIGYKGIRKRPWGKFAAKIRAPSIKGTRLWLGAFETAEEVARVYDTAAFHFRGHKAILNFPNHYSLHNPNFFSFFVLWSGPCESGILNTTPRKPYFRIGILGQEVAGRTASPTTSFS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3053 241 ProSiteProfiles AP2/ERF domain profile. 14 78 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 SUPERFAMILY DNA-binding domain 14 62 IPR016177 GO:0003677
Glsi02g3053 241 SUPERFAMILY DNA-binding domain 127 186 IPR016177 GO:0003677
Glsi02g3053 241 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 CDD AP2 128 187 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 Gene3D AP2/ERF domain 127 186 IPR036955 GO:0003700|GO:0006355
Glsi02g3053 241 Gene3D AP2/ERF domain 13 76 IPR036955 GO:0003700|GO:0006355
Glsi02g3053 241 PANTHER DNA-BINDING DOMAIN 11 62 IPR044808 GO:0003700|GO:0009873
Glsi02g3053 241 Pfam AP2 domain 127 178 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 CDD AP2 14 62 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 FunFam Ethylene-responsive transcription factor 2 126 186 - -
Glsi02g3053 241 SMART rav1_2 14 69 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Glsi02g3053 241 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3053 Glsi-ChrGlsi02 79167931 79174022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3053 14 62 AP2-EREBP Transcription Factor Family AT3G23230 77.551 3.13e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi02g3053 AP2 7.3e-07 CL0081