LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3052	ATGTGGGACGAGCCTTATCCAGACATTTTGTTTGAATCTTATTTTTCAAGCAGTCCTGGTGGTGATTATCATGATCATACTCTGCTTGATTGTCTCTCCTTCGATATGGTGGACTACTCCACAGATCCTAATGCACCAACCAGTAAGAATGAGAACAAGAACGAGGCAAAGGAAATGGTGCGTTCCGAAATCAAACAACTGGAGGCTAACAAAGAGAAATCATATATAGGGGTGAGGAAGAGGCATTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACCAGGAATGGGACTCGGGTTTGGCTTGGAACGTTTGAAAGTGCAGAGGCAGCTGCTTTAGCGTATGATCAAGCTGCATTTAGCACGAGAGGTCCAACAGCTGTTCTTAATTTTCCAGTGAAAACGGTGAAGGAATCTTTGAAAGACATCAACTATAGTTATAGCAAAGGTTGTTCGCCTGCATTAGCACTGAAGGAGAGGAACTACATCCAGCGAAGATTGTCATCGGCAAAGCCTAGGAAAAGCAAAGGGAAGCAGGAATCAGAGGAACCCGGTGTGGTGGTGCTTGAAGACTTGGGAGTTGAATACCTCGAGCAACTTCTCACCTTCTCGGATCAAACTGCAAGTGCAAGCCGTAGCTACTGTGAACATTATTAA	657	0.4475	MWDEPYPDILFESYFSSSPGGDYHDHTLLDCLSFDMVDYSTDPNAPTSKNENKNEAKEMVRSEIKQLEANKEKSYIGVRKRHWGKFAAEIRDTTRNGTRVWLGTFESAEAAALAYDQAAFSTRGPTAVLNFPVKTVKESLKDINYSYSKGCSPALALKERNYIQRRLSSAKPRKSKGKQESEEPGVVVLEDLGVEYLEQLLTFSDQTASASRSYCEHY	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3052	218	PRINTS	Ethylene responsive element binding protein signature	75	86	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	PRINTS	Ethylene responsive element binding protein signature	98	114	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	CDD	AP2	73	133	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	Coils	Coil	50	73	-	-
	Glsi02g3052	218	SMART	rav1_2	74	138	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	Pfam	AP2 domain	74	124	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	Gene3D	AP2/ERF domain	73	134	IPR036955	GO:0003700\|GO:0006355
	Glsi02g3052	218	PANTHER	DNA-BINDING DOMAIN	55	205	IPR044808	GO:0003700\|GO:0009873
	Glsi02g3052	218	SUPERFAMILY	DNA-binding domain	74	133	IPR016177	GO:0003677
	Glsi02g3052	218	ProSiteProfiles	AP2/ERF domain profile.	74	132	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3052	218	FunFam	Ethylene-responsive transcription factor 2	73	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3052	Glsi-ChrGlsi02	79150460	79151116	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3052	64	209	AP2-EREBP Transcription Factor Family	AT3G23240	57.432	6.80e-53	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi02g3052		AP2	1e-11	CL0081