Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3051 ATGCACCTTTGGCTGGGAACCTTTGACACAGCGGAGCAGGCTGCTAGGGCTTATGATACTGCTGCTTTCAACTTCAGGGGTCACAAGGCCATTCTCAACTTCCCAAATGACTACCCATCTCACCATACCTCTCTGTCAATTGGTCTGCCTTCTATTTCTTCTTCTTCTTCCATTGCTGCAGCTTCAAGTGATGGCTTTGTGAAAGCAGGAGGACTACAAGGTGATCCTTTGGAGATGGAATACTTGGATAACAAGCTGTTGGACGATCTTCTTCAGGTCAATTTCAAGTCTTCAACCTTGTTAACAAATCAGATGAGACTGGCTACAGAGGGATTCGAAAGAGGCCTTGGGGTACTCGTTTATGGCCTGGGAGCCTTTGAAACTGCCGAGGAGGCCGCCAGGGCTTATGATACTTCTGCTTTTCATCTTCGAGGTCACAAAACCATTCTCAACTTCCCTAATCACTACCCATTTCATAACCCTAACTCTTCTTCTCCTTCTTCGGATTGTGGTGAGGAGCACGTGAAAGCGGCATCCTCAACACCACCCCAAGGAAACCATACTTTAGAATTGGAATACTCGGACAACAAGTTGCTGAACGAACTCCTTCACCCACCACTTCATATTCACAGTCAACCTTAA 642 0.4657 MHLWLGTFDTAEQAARAYDTAAFNFRGHKAILNFPNDYPSHHTSLSIGLPSISSSSSIAAASSDGFVKAGGLQGDPLEMEYLDNKLLDDLLQVNFKSSTLLTNQMRLATEGFERGLGVLVYGLGAFETAEEAARAYDTSAFHLRGHKTILNFPNHYPFHNPNSSSPSSDCGEEHVKAASSTPPQGNHTLELEYSDNKLLNELLHPPLHIHSQP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3051 213 Pfam AP2 domain 3 28 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 CDD AP2 3 37 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 ProSiteProfiles AP2/ERF domain profile. 1 35 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 PANTHER DNA-BINDING DOMAIN 3 54 IPR044808 GO:0003700|GO:0009873
Glsi02g3051 213 ProSiteProfiles AP2/ERF domain profile. 123 153 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 Gene3D AP2/ERF domain 112 154 IPR036955 GO:0003700|GO:0006355
Glsi02g3051 213 Gene3D AP2/ERF domain 1 36 IPR036955 GO:0003700|GO:0006355
Glsi02g3051 213 SMART rav1_2 105 159 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 SMART rav1_2 2 41 IPR001471 GO:0003700|GO:0006355
Glsi02g3051 213 MobiDBLite consensus disorder prediction 157 188 - -
Glsi02g3051 213 SUPERFAMILY DNA-binding domain 122 154 IPR016177 GO:0003677
Glsi02g3051 213 SUPERFAMILY DNA-binding domain 2 36 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3051 Glsi-ChrGlsi02 79130888 79131872 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3051 2 91 AP2-EREBP Transcription Factor Family AT3G23230 54.444 3.38e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3051 AP2 4.3e-05 CL0081