LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3050	ATGTCTTCCTCTGTGTTTGAGCACCCAGATTGGGAGTTCTGGCAGGAGCCTTCTGATATTTTCTTGGAATGTTCTTCAAGCAACCAAGTTCGTGAAGACCCTTTCTACGATTCTCTTTCCTTCGACATGGTGGATTGTACCGATCCACAAGTACCAACCTACGGGAATCAGTTTGACTCCCATTCAAAGCAAGCTGCGGGGAAGTCGGAAGCCAAAGAAGGGAAGCAAAGTAAGGAGAAATCATATATAGGGGTGAGGAAGAGGCCATGGGGAAAATTTGCAGCAGAGATAAGAGATACAACCAGGAATGGAGCTCGGGTTTGGCTTGGAACGTTTGAAAATGCAGAGGCAGCTGCTTTAGCCTATGATCAAGCTGCATTTACCATGAGAGGCCCAAAGGCTGTTCTTAATTTTCCGATGGAGAGGGTGAATGAATCTCTGCAGAAGATCAAGTATGGCTCGCGCATAGGGTGTTCTCCTGCTTTGGAACTCAAACAGAGACACCGCGTCCAAAGAAAATTATTATCAAAGGCTAGGAAAGGCAAAGACAAACAGAAATCAGAGGCCCCAACAGTGGTGGTGCTTGAGGATTTGGGAGTTGAATATCTAGAGCAACTTCTGAGCATGTCTAGCCCAAGCCCTAACTACTTCATGTAA	657	0.4612	MSSSVFEHPDWEFWQEPSDIFLECSSSNQVREDPFYDSLSFDMVDCTDPQVPTYGNQFDSHSKQAAGKSEAKEGKQSKEKSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFENAEAAALAYDQAAFTMRGPKAVLNFPMERVNESLQKIKYGSRIGCSPALELKQRHRVQRKLLSKARKGKDKQKSEAPTVVVLEDLGVEYLEQLLSMSSPSPNYFM	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3050	218	CDD	AP2	80	139	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	SMART	rav1_2	81	145	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	Pfam	AP2 domain	81	131	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	PRINTS	Ethylene responsive element binding protein signature	121	141	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	PRINTS	Ethylene responsive element binding protein signature	82	93	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	MobiDBLite	consensus disorder prediction	53	78	-	-
	Glsi02g3050	218	FunFam	Ethylene-responsive transcription factor 2	80	141	-	-
	Glsi02g3050	218	SUPERFAMILY	DNA-binding domain	81	141	IPR016177	GO:0003677
	Glsi02g3050	218	PANTHER	DNA-BINDING DOMAIN	52	208	IPR044808	GO:0003700\|GO:0009873
	Glsi02g3050	218	ProSiteProfiles	AP2/ERF domain profile.	81	139	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3050	218	Gene3D	AP2/ERF domain	80	141	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3050	Glsi-ChrGlsi02	79116793	79117449	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3050	79	216	AP2-EREBP Transcription Factor Family	AT3G23240	60.000	5.14e-54	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi02g3050		AP2	1.6e-13	CL0081