Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3049 ATGTCTTCCTCTGTGTTTGAGCACCCAGATTGGGATTTCTGGCAGGAGCCTTCTGATATTTTCTTGGAATGTTCTTCAAGCAACCAGGTTCGTGAAGACCCTTTCTACGATTCTCTTTCCTTCGACATGGTGGATTGTACCGATCCACAAGTACCAACCTACGGGAATCAGTTTGACTCCGATTCAAAGCAAGCTGCGGGGAAGTCGGAAGCCAAAGAAGGGAAGCAAAGTAAGGAGAAATCATACATAGGGGTGAGGAAGAGGCCATGGGGAAAATTTGCAGCAGAGATAAGAGATACAACCAGGAATGGAGCTCGGGTTTGGCTTGGAACGTTTGAAAATGCAGAGGCAGCTGCTTTAGCCTATGATCAAGCTGCATTTACCATGAGAGGCCCAACGGCTGTTCTTAATTTTCCGATGGAGAGGGTGAGAGAATCTCTGCAAGAGATCAAGTATGGTTTGCGCAAAGGGTGTTCGCCTGCTTTGGAACTCAAACAGAGGCACCGCATCCAAAGAAAAATATTATCAAAGGCTAGGAAAGGCAACGACAAACAGAAATCAGAGGCGCAAACGGCGGTGGTGCTTGAGGATTTGGGAGTTGAATACCTAGAGCAACTTCTGAGCATGTCAAGCCCCAGCCCTAGCTATTTCAAATAA 657 0.4688 MSSSVFEHPDWDFWQEPSDIFLECSSSNQVREDPFYDSLSFDMVDCTDPQVPTYGNQFDSDSKQAAGKSEAKEGKQSKEKSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFENAEAAALAYDQAAFTMRGPTAVLNFPMERVRESLQEIKYGLRKGCSPALELKQRHRIQRKILSKARKGNDKQKSEAQTAVVLEDLGVEYLEQLLSMSSPSPSYFK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3049 218 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Glsi02g3049 218 MobiDBLite consensus disorder prediction 65 80 - -
Glsi02g3049 218 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Glsi02g3049 218 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Glsi02g3049 218 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677
Glsi02g3049 218 PANTHER DNA-BINDING DOMAIN 63 208 IPR044808 GO:0003700|GO:0009873
Glsi02g3049 218 FunFam Ethylene-responsive transcription factor 2 80 141 - -
Glsi02g3049 218 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Glsi02g3049 218 MobiDBLite consensus disorder prediction 52 80 - -
Glsi02g3049 218 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Glsi02g3049 218 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Glsi02g3049 218 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3049 Glsi-ChrGlsi02 79101150 79101806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3049 34 216 AP2-EREBP Transcription Factor Family AT3G23240 51.351 6.89e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3049 AP2 1.6e-13 CL0081