LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3046	ATGGATTATGACTGTTCTCTGTTTCAGTACCAAAGCCCTGAGTTGTCCTCCTCGTCGGGTGCATGGGAATCTCTGTCGTGGCAAGAGCTATATTCATTGAACGATATGGACAACAACCTTGCCTTCAGCTTCAGTGAATTCACACAAGATACCATGCCTCAAAGTGTGGTAGACGAGGGAATAAAGAAGGAATCGTCCTGGGAATATTCCAATTCACAAGGAGGGGGGAAGGTAAAACATGGAGCAGCAGCGGCAGCACCATCTACGAGAGAGAAGAGGGAGTACAGAGGAGTAAGGAGAAGGCCATGGGGAAAATATGCAGCGGAGATAAGGGACTCCACTAGAAACGGGGTTAGAGTGTGGATTGGAACATTCGACACAGCTGAGGCTGCTGCTTTAGCTTATGATCAAGCAGCTTTCTTGACAAAGGGCTCACTCGCCACTCTTAATTTCCCAGAGCATGTGGTGAAGGAGTCACTCACAGAGTTGGGATGTAAGGCTGCATGGCAACAAGAAGGTGGCAGTTCGCCTGTGTTAGAACTCAAAAGGAGGCACACCTTGAGATCGAAGTCCAAAACAAAGACTAAAAAGATGATCGGTAAAGGGAGTTGCAGGGAGTTGGAGGGTACTGAAAATGTGTTGGTGTTGGAGGACCTGGGTGCTGAATATCTAGACCAACTTCTGAGCTCCACTTAA	696	0.4784	MDYDCSLFQYQSPELSSSSGAWESLSWQELYSLNDMDNNLAFSFSEFTQDTMPQSVVDEGIKKESSWEYSNSQGGGKVKHGAAAAAPSTREKREYRGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFLTKGSLATLNFPEHVVKESLTELGCKAAWQQEGGSSPVLELKRRHTLRSKSKTKTKKMIGKGSCRELEGTENVLVLEDLGAEYLDQLLSST	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3046	231	SMART	rav1_2	94	158	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	PANTHER	DNA-BINDING DOMAIN	66	228	IPR044808	GO:0003700\|GO:0009873
	Glsi02g3046	231	MobiDBLite	consensus disorder prediction	68	96	-	-
	Glsi02g3046	231	Gene3D	AP2/ERF domain	93	154	IPR036955	GO:0003700\|GO:0006355
	Glsi02g3046	231	CDD	AP2	95	154	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	ProSiteProfiles	AP2/ERF domain profile.	94	152	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	SUPERFAMILY	DNA-binding domain	95	153	IPR016177	GO:0003677
	Glsi02g3046	231	PRINTS	Ethylene responsive element binding protein signature	95	106	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	PRINTS	Ethylene responsive element binding protein signature	118	134	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	Pfam	AP2 domain	95	140	IPR001471	GO:0003700\|GO:0006355
	Glsi02g3046	231	FunFam	Ethylene-responsive transcription factor 2	93	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3046	Glsi-ChrGlsi02	79082836	79083531	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3046	91	231	AP2-EREBP Transcription Factor Family	AT2G31230	50.602	1.28e-47	155

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi02g3046		AP2	6.7e-13	CL0081