Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3043 ATGGATTTACATTCTTTCTTCCGTTACCCAAATCCTCAGTGCTCCCCTGCAGATTCCCCTGTTTCTCAACAATCTTTCTCCTGGGAATGGGACGACTTGTTCTTGTTCAACTCGAACGACTACTCCCAAGATATGATGTTCCATGATGTCTTAGCCAAGGAATCATCCTCGGAAACTAATTCTTCATCCTCTCTGGGAGGATTTGAATTGCAGGAAGTCTCATCCGGTTTCAATTCATCATCACCGCCGCCGTCACAGCCACCATCAGTACCAAAACCGACGTCTCCGCCCAAGGAAAATAACACAGAGAAGAAGGCGTACATAGGAGTAAGAAGGCGGCCATGGGGAAAATACGCGGCGGAGATAAGAGACTCGACGAGAAACGGGGTTCGAGTGTGGATTGGAACATTTGACACTGCCGAGGCTGCCGCTTTAGCTTATGATCAAGCAGCTTTGAGTACACGTGGTTCGCAGGCGGTGCTTAATTTCCCAGAGGAAGTGGTGAGGAAGTCCCTGAAAGACATGGCAAATAAGGCTTGGGAAGATGGTTGCTCCCCTGTATTGGCACTCAAGAAGAAGCACACCTTGAGAAAAAAGTCAAAGGCTACTCATAAAAATACCAAAAAGGATGTGTTGGTGTTGGAGGATTTGGGGGCGGAATATCTAGAGCAGCTTTTGAGTTTGACTTCGTGA 693 0.4747 MDLHSFFRYPNPQCSPADSPVSQQSFSWEWDDLFLFNSNDYSQDMMFHDVLAKESSSETNSSSSLGGFELQEVSSGFNSSSPPPSQPPSVPKPTSPPKENNTEKKAYIGVRRRPWGKYAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSQAVLNFPEEVVRKSLKDMANKAWEDGCSPVLALKKKHTLRKKSKATHKNTKKDVLVLEDLGAEYLEQLLSLTS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3043 230 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Glsi02g3043 230 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Glsi02g3043 230 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Glsi02g3043 230 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Glsi02g3043 230 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Glsi02g3043 230 Gene3D AP2/ERF domain 105 166 IPR036955 GO:0003700|GO:0006355
Glsi02g3043 230 MobiDBLite consensus disorder prediction 81 95 - -
Glsi02g3043 230 FunFam Ethylene-responsive transcription factor 2 105 165 - -
Glsi02g3043 230 MobiDBLite consensus disorder prediction 73 107 - -
Glsi02g3043 230 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Glsi02g3043 230 PANTHER DNA-BINDING DOMAIN 63 226 IPR044808 GO:0003700|GO:0009873
Glsi02g3043 230 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3043 Glsi-ChrGlsi02 79058940 79059632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3043 104 226 AP2-EREBP Transcription Factor Family AT3G23240 59.848 1.83e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g3043 AP2 3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3043 02 79058940 79059632 Glsi11g0735 11 4641827 4643881 CCT
Glsi02g3043 02 79058940 79059632 Glsi02g3043 02 79058940 79059632 ECH