LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3039	ATGGGGAGAGCTCCTTGCTGCGAGAAAGTGGGGTTGAAGAAAGGTCCATGGACTCCGGAAGAAGATCAGATACTCGTTCATTATGTCAACACCTACGGCCACAGCAATTGGCGTGCCCTCCCCAAACAAGCTGGGCTGCCAAGGTGTGGAAAGAGTTGCAGACTGCGATGGATTAATTATTTGAAGCCAGACATCAAACGGGGAAATTTCACCAGAGAAGAAGAGGATACCATTATCAAGTTGCATGAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCGAGGTTGCCGGGACGCACGGACAATGAAATAAAGAATGTGTGGCACACCCACTTGAAGAAGAGACTCCCGCAAAACCAACAGAACCTCCAATTAAAACGAAAACCAAAACAAAAAGACCAAGACCCTAAGAAAGAACAACACCCCATGACTAGTCCGGAAACTCAAGACAAACCAGAAAGCACGGAGAAGAGGCCAGTTTCCCCTTCACAGTGTTCAAGTACAGACATGTCCGAACATAACAGTAGTACTGCTACTATTACTACTAACGACAATAGTCTGGCATTGGACGATAATTTCTGGTCGGAAGTACTGTCGGCTGATAATTCCGGTAAGACCAGCTATATTCTTCCGACCATTGTTGGTGGTGTGGAACAACAGTTTCAATTTCTATTCTCTCCGCTAGAGACTGGCGAAGCAGACCATGTTAGTTCATCAAGCATGAGCGATGGCATGGATTTTTGGTACGATGTTTACACCAGAGCAGAGGAATTCACAGAGCTACCACAATTATGA	795	0.4579	MGRAPCCEKVGLKKGPWTPEEDQILVHYVNTYGHSNWRALPKQAGLPRCGKSCRLRWINYLKPDIKRGNFTREEEDTIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNQQNLQLKRKPKQKDQDPKKEQHPMTSPETQDKPESTEKRPVSPSQCSSTDMSEHNSSTATITTNDNSLALDDNFWSEVLSADNSGKTSYILPTIVGGVEQQFQFLFSPLETGEADHVSSSSMSDGMDFWYDVYTRAEEFTELPQL	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3039	264	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Glsi02g3039	264	CDD	SANT	69	112	IPR001005	-
	Glsi02g3039	264	MobiDBLite	consensus disorder prediction	126	157	-	-
	Glsi02g3039	264	FunFam	Transcription factor MYB15	68	143	-	-
	Glsi02g3039	264	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Glsi02g3039	264	CDD	SANT	16	61	IPR001005	-
	Glsi02g3039	264	MobiDBLite	consensus disorder prediction	158	179	-	-
	Glsi02g3039	264	FunFam	MYB-related transcription factor	13	66	-	-
	Glsi02g3039	264	Gene3D	-	11	67	-	-
	Glsi02g3039	264	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Glsi02g3039	264	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Glsi02g3039	264	SMART	sant	13	63	IPR001005	-
	Glsi02g3039	264	SMART	sant	66	114	IPR001005	-
	Glsi02g3039	264	MobiDBLite	consensus disorder prediction	113	179	-	-
	Glsi02g3039	264	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Glsi02g3039	264	Gene3D	-	68	144	-	-
	Glsi02g3039	264	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Glsi02g3039	264	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Glsi02g3039	264	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3039	Glsi-ChrGlsi02	79015204	79016558	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3039	1	264	MYB Transcription Factor Family	AT2G31180	50.000	6.49e-90	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi02g3039		Myb_DNA-binding	5.8e-15	CL0123