Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3031 ATGCCGTCCCTGATGTCTCCCGGGAAAATCCATCGATTAGAGATGGATAACTTCAAGTCCTACAAGGGTTTTCAAGTAATCGGTCCTTTCTACGACTTCACCGCAATTATTGGCCCCAATGGTGCTGGCAAGTCGAATCTCATGGACGCCATCAGCTTTGTGCTCGGAGTGAGGACGGGCCAGCTACGTGGGGCTCAACTCAAGGACTTAATCTACGCGTACGACGACAAGGAAAAGGAACAGAAGGGGCGCAGGGCCTTCGTTCGGTTGGTTTATCAGTTCGGTAACGGGTCGGAGATCCAATTCACCAGGACCATCACCAGTTCTGGCGGGAGCGAGTACCGGATTGACGGCAACGTTGTTACGTGGGATGTATATAATGCTAGACTGAAGTCGCTGGGGATTCTTGTCAAGGCTCGCAATTTTTTGGTGTTTCAGGGTGATGTGGAATCCATTGCGTCTAAAAATCCAAAAGAGCTCACCGCCCTTCTAGAGCAAATATCTGGCTCTGATGAGCTCAAGAGAGACTATGAGCAATTTGAAGAAGAAAAAGGCAGAGCTGAAGAAAAATCAGCACTTCTTTATCAGAAGAAGAAGACAGTAGTTATGGAGAGAAAGCAAAAGAAAGAACAAAAGGAAGAAGCCGAGAAACATCTCCGCTTGCAGGACCAACTGAAATCTTTAAAGAGAGAGCATTTCTTGTGGCAGTTGTTCAATATAGAAAAAGATATTGCGAAGACAACTGAGGATCTTGAGGATGAGAGAAAAAGTCGTCAAGATGTCATGGAAGAATTAGATCATTTTGAACGTGAAGCCAGTAAAAAGAAGAAAGAACAGGCCAAATATCTGAAAGAGATTGCACAGTGTGAAAAGAGAATTGCTGAGAGAAGCCACAAACTTGACAAGAATCAACCTGAGCTTCTGAAGTTGAAGGAGGAAATGTCTCGTATAAATTCAAAAATTAAAAAAGGGAAGAAGGAGCTTGACAGGAAAAGAGAAGAAAGGAGGAAGCATGCTAATGACATAGCAGAGCTACAGAGGGGCATACGGGATCTCTCAGCAAAACTGGAAGATCTACATGAAAAGAGTCGAGTTGTTGGTGAGCAACTACAGTTAGATGGCAGTGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCCAAGCTTAGGGATGAGAAAGAGGTTCTTGATAGGCAACAACATGCTGATTGTGAAGCTCAAAAAAATTTGAATGAAAATTTTCAGCAGTTAAAGAATAGAGAATCTGAATTGAATTCACAGGAAGAACAAATGCAAGCAAGACTGAAAAAAATTCTTGATAATTCAGCAAAACATAAGGATGACCTTGCAAACTTGAAAAAAGAACTGCGCATGATGCAGGACAGGCATCGAGATTCCAGAAAAAAATATGAAAATTTGAAGTTGAAAATTGGTGAGATAGAAAATCAACTACGTGAATTGAAGGCTGATAGATACGAAAATGAGAGAGATGCCCGGCTGTCCCAGGCAGTGGAGACTCTCAAGCGACTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCTACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCGGTTGTAGTTGAGGATGAAAAAACCGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTCTGCAATCAGTTCGTGTGAAGCCAATATTTGAAAGATTGCGCACATTAGGTGGCACTGCAAAGCTGGTTTTTGATTTTACATGGTTCAGTGTTGTCCATGGATGCCGTGGTGGTTCAGGGGGTTCTGCTATAAAACCACCAAGGCCTGCTGGTGCCAATGTGTCTGCTATGTCTTTTGATCCTGCCTTGGAGAAGGCTGTTCTCTTTGCTGTTGGGAATACTCTCGTTTGTGATGACCTTGAGGAGGCCAAAGTTTTGAGCTGGAGTGGGGAGAGGTTCAAAGTTGTAACTGTGGATGGAATTCTATTGACAAAGTCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAGGCAAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGACTCAAGAGAAAGAAAGAACAGTATGAATCAGAGTTGGAAGAACTGGGATCAATAAGAGAAATGCATCTAAAGGAGTCTGAAGCATCCGGAAAAATTAGTGGACTTGAAAAGAAGATTCAATATGCTGAAATTGAAAAGCGAAGCATTGAAGACAAAGTCTCAAATTTGAGGCAAGAAAAAGAGACCATCAAAGGAGAAATTGAGCGTATTAGTCCAGAACTCCGGAAGTTAAATGATGCTGTTGATAAGAGGAATGCCGATATACGTAAGCTGGAGAAGAGGATTAATGAAATTACTGATCGGATATACAAAGACTTCAGTAAGTCAGTTGGGGTTGCAAACATCCGCGAGTATGAAGAAAACCGACTCAAGGCTGCTCAAAATATAGCAGAGGAGAGGCTAAGCTTGAGTAGCCAACTATCAAAATTAAAATATCAGTTGGAGTACGAGCAAAATCGGGACATGAGTTCTCGAATCAGTGAACTGGAATCTTCTCTACGCACTCTAGAACATGATTTAAAACAAATACAAAACAAAGAGGCTGAAGCAAAGCTAGCAGCTGAGAAAGCTACTGAAGAGATTAATCGGTTGAAGGAAGAAACTCAAGAGTGGAAATCAAAATCAGAAGACTGTGAGAAGGATATCCAAGAATGGAAGAAGCGGGCTTCGTCGGCCACTACAAGCATAACTAAACTTAACCGTCAGATAAATTCGAAGGAGGCACAGATTGAGCAGTTGATGGTCCGGAAACAGGAAATAACAGAGAAGTGTGAACTAGAACAGATTAGCCTTCCAACTATATCAGATCCTATGGATACTGAAACCTCAACGCCAGGTTTAGTTTTTGACTTTGATCAGTTAAGTAGGACACTGAGGGATAGGAGGCACTCTGACAGGGACAAAATTGAGGTGGAATTTAAGCAAAAAATGGATGCCTTGACATCTGAAATTGAAAGAACAGCACCAAATTTGAAGGCATTAGACCAATATGAGGCTCTGCTGGAAAAGGAAAGAGCTGTAATTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCTGACAGGTTCAACTCAGTTAAGCAGAAGAGGTATGAGTTGTTCATGGATGCTTTCAACCATATATCTAATAATATTGATAAAATATACAAGCAACTTACTAAAAGCAACACACACCCACTGGGGGGAACGGCATACTTAAATTTGGAAAATGAAGACGATCCTTTTCTCCATGGTATTAAGTACACTGCTATGCCCCCAACGAAGCGCTTTCGTGATATGGAGCAGCTATCTGGTGGGGAGAAGACTGTTGCTGCACTAGCATTGTTATTCTCCATCCACAGTTATAAGCCTTCACCATTTTTCATATTGGATGAAGTTGATGCTGCATTGGACAACTTAAACGTTGCTAAGGTTGCTGGATTCATTCGTTCAAAATCTTGTGAAGGAGCAAGGGCTAGTCAAGATGCTGATGGTAGCAATGGTTTTCAAAGTATTGTGATATCTCTGAAAGATAGCTTTTATGACAAAGCTGAAGCTTTGGTTGGGGTATACAGGGACTCGGAAAGAAGCTGTTCGAGAACTCTGACATTTGACTTGACTAAGTATCGTGAGTCATAA 3744 0.4191 MPSLMSPGKIHRLEMDNFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQFGNGSEIQFTRTITSSGGSEYRIDGNVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKGRAEEKSALLYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSLKREHFLWQLFNIEKDIAKTTEDLEDERKSRQDVMEELDHFEREASKKKKEQAKYLKEIAQCEKRIAERSHKLDKNQPELLKLKEEMSRINSKIKKGKKELDRKREERRKHANDIAELQRGIRDLSAKLEDLHEKSRVVGEQLQLDGSDLEEYFRIKEEAGMKTAKLRDEKEVLDRQQHADCEAQKNLNENFQQLKNRESELNSQEEQMQARLKKILDNSAKHKDDLANLKKELRMMQDRHRDSRKKYENLKLKIGEIENQLRELKADRYENERDARLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIFERLRTLGGTAKLVFDFTWFSVVHGCRGGSGGSAIKPPRPAGANVSAMSFDPALEKAVLFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKRKKEQYESELEELGSIREMHLKESEASGKISGLEKKIQYAEIEKRSIEDKVSNLRQEKETIKGEIERISPELRKLNDAVDKRNADIRKLEKRINEITDRIYKDFSKSVGVANIREYEENRLKAAQNIAEERLSLSSQLSKLKYQLEYEQNRDMSSRISELESSLRTLEHDLKQIQNKEAEAKLAAEKATEEINRLKEETQEWKSKSEDCEKDIQEWKKRASSATTSITKLNRQINSKEAQIEQLMVRKQEITEKCELEQISLPTISDPMDTETSTPGLVFDFDQLSRTLRDRRHSDRDKIEVEFKQKMDALTSEIERTAPNLKALDQYEALLEKERAVIEEFEAVRKEEKEKADRFNSVKQKRYELFMDAFNHISNNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGSNGFQSIVISLKDSFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3031 1247 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Glsi02g3031 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
Glsi02g3031 1247 Coils Coil 412 502 - -
Glsi02g3031 1247 Gene3D - 479 592 - -
Glsi02g3031 1247 SUPERFAMILY Smc hinge domain 481 712 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Glsi02g3031 1247 PIRSF SMC 8 1243 IPR024704 GO:0005524|GO:0016887
Glsi02g3031 1247 Coils Coil 859 963 - -
Glsi02g3031 1247 Coils Coil 822 842 - -
Glsi02g3031 1247 Coils Coil 781 808 - -
Glsi02g3031 1247 CDD ABC_SMC1_euk 1126 1241 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Glsi02g3031 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1189 IPR027417 -
Glsi02g3031 1247 Coils Coil 307 362 - -
Glsi02g3031 1247 Pfam SMC proteins Flexible Hinge Domain 517 661 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Glsi02g3031 1247 FunFam Structural maintenance of chromosomes protein 1068 1246 - -
Glsi02g3031 1247 Pfam RecF/RecN/SMC N terminal domain 10 1229 IPR003395 -
Glsi02g3031 1247 Coils Coil 1034 1068 - -
Glsi02g3031 1247 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Glsi02g3031 1247 Coils Coil 244 292 - -
Glsi02g3031 1247 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1247 - -
Glsi02g3031 1247 Coils Coil 170 231 - -
Glsi02g3031 1247 Coils Coil 739 773 - -
Glsi02g3031 1247 Gene3D - 8 217 IPR027417 -
Glsi02g3031 1247 Gene3D - 869 1246 IPR027417 -
Glsi02g3031 1247 Coils Coil 705 732 - -
Glsi02g3031 1247 Gene3D - 623 689 - -
Glsi02g3031 1247 SMART SMC_hinge_2 517 663 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3031 Glsi-ChrGlsi02 78960406 78984880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3031 8 112 Structural Maintenance of Chromosomes family AT5G61460 33.929 6.00e-08 55.5