Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3027 ATGCCCGGTTCTGCTTGCTTCGAACATAAACATTCTGGTCACTCTGTTCTCTTCGCTAGATTGCTGATAACCTTAGAAAGTAGAAAAATTCACAGGTTGGAGGACCCCATTTGGAAAGTGAATTTATCTGGGTTTTACTACTCTCACATGGCTTCAGCAGAGGTAAAGGTACGTTATGATTCAAAGCTTCCGTTTTCTTTTCTTACAAAATGCATTTCCTTGTCTTTTAAGGGCCTTGTCAGGTTCTTCATAAGTGATGTATTTGATTTGTTTGTGGTAAAACACGTACTATCTGTTCATTTGCTGAAAAAACTTGGCAAAAGTCGCCAAGATGTGAAGGATTATTTTGCTAAAACCTGTAAACCAAAAGTTTTTTCTCCTTCAAAGGACTCTGACTTGCATGCACCATTTGCAGTGCGCAGGCTTGTGTCATTTGTTCAATGTTCTGCCAAAGCAGGTCAAACAGATACAAATTCAGTAAAATGTCTTATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTTCAGAAGAACTGTAATAATATGATTGGTGTGTTAAAGCGTTTGAAACCAGTGCTTGATGATGTTGTAGACTACAAAATCGACTTAGATGAAAATTTATGTAAAGAGTGTGAGGAATTGGATACGGCAGTTAACGAGGCTAGAGAGTTCATGGAAAAATGGAGTCCAAAGATGAGCAAGATTCACTGTGTTCTGAGAAGTGGGGCATTGTTGATGAAAATACAGATCTATTCACTTGAGATTTGTCACATGATATTTAGATCCCTACAGTCACCTCCATCTACTTCAGTTTTGGCTAGTCTTCAGCACCACATGCAGGAACTTCAATGTTTGAAAAAGGAGCCAGCCACAGTTTATATAGAAGAGGCACTGAGAAATCAAAGAGAAAATATTGGACCTGGCAATGAAAATCTAAAGAATATTATTGAGTTACTTAAATTGACATCAAACCTGGAACTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAATGCTGAAGTCAATAAAATGAAAGGGGAATTAGATGAAATTACCGAAATTTTGAATCTTGTCTGCAATATACGTGATTATGCAATTAAAATTGAGTGCTCTGAAGTCAAAAGTGGTGTCTCAATCCCTCCGTATTTCCGCTGTCCTTTATCATTGGAACTCATGCTGGATCCTGTTATCGTGGCTTCAGGTCAAACATACGAGAGGTTGTCCATCCAAAAGTGGCTTGATCATGGGTTGACCGTTTGTCCCAAGACTCATCAAAGACTTACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTGAGTCCAATATTTCTGTCCATATGAATACCCCCTCCAATCATTTATGGCCTCAAGGTTTAGCTCGTTCATGTAGTTTTGGGTCTGCACACAGTAGCAATTCCACATCAAGATCATCTCTTCAAACTGGAAATGCATTTGAGAAGCAAAAGGGTGATATCTCTTCTAGATTAAGTGGAGAATCCAATGGATGCCAGAGCATAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATATATTTATAGCAGAAGTGAATCGTTCTCAAGCTCTGTATCTATTACTGATTATGCACATCCAGTTTCAAAAGAAGCATCAGAGATATCCAATGAGCATGAAATTGTGAAGGAGCTATCTGGAGAAATAACAATTGGATGTCCTGCTTCTCCAGCAATTAAAGAATCAGGGATTTCTCCTTGGTTATCAGGAAAGCAATTTCAAAGCCCAGGATCTAAAATAGGAGTAGAGAATAGAAATTATAATAATAATAATAATAATAATAATAGTAGTAGTCATTCAAAAGTGCACTCCCTTCCTGTTTTCAACTTGGGATCTGATGAGTTGACCACCACATCTTATGTCAGTAAGTTGATTGAAGACCTTCACAGCCAATCCAATGAAGTGCAAACTAGGGCTGCAGAAGAATTGAGGCTACTTTCAAAGCACAACATGGAAAACCGAATCCTTATAGGGCAGTGTGGGGCTATAATGCCTTTAGTCTCGTTACTATATTCTGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCTTTACTGAATTTGTCCATTTATGAAGATAACAAGGTCTTGATTGTGGAAGCTGGAGCGATAGAACCACTTATCCATGTTTTGAAAACAGGAAATCATGGAGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTCTCTGTAATAGAAAACAATAAGGAAAAAATTGGCCGGTCCGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGGTTCAGGGACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTCTATTTAACCTATCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTATCTGGTTCAGTTAATGGACCCTGCTGTCGGAATGGTTGACAAGGCTGTTGCTCTTCTGGCAAACCTGTCAACAATTGCAGAGGGCCGATTAGCAATTGCAAGGGAGGGGGGCATCCCCTTACTAGTTGAAATTGTTGAATCAGGTTCTCAAAGGGGAAAGGAAAACGCTGCATCCATTCTCTTGCAACTATGCCTTCATAGTTCCAAGTTTTGTACCCTGGTTCTGCAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAGAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCAGCGGGAAGGAGCTACTGGAAAGGGAAAATCATGA 2847 0.3962 MPGSACFEHKHSGHSVLFARLLITLESRKIHRLEDPIWKVNLSGFYYSHMASAEVKVRYDSKLPFSFLTKCISLSFKGLVRFFISDVFDLFVVKHVLSVHLLKKLGKSRQDVKDYFAKTCKPKVFSPSKDSDLHAPFAVRRLVSFVQCSAKAGQTDTNSVKCLINSISRFIHLVSCQTVKPMPFQKNCNNMIGVLKRLKPVLDDVVDYKIDLDENLCKECEELDTAVNEAREFMEKWSPKMSKIHCVLRSGALLMKIQIYSLEICHMIFRSLQSPPSTSVLASLQHHMQELQCLKKEPATVYIEEALRNQRENIGPGNENLKNIIELLKLTSNLELLKESIAVEKERLNAEVNKMKGELDEITEILNLVCNIRDYAIKIECSEVKSGVSIPPYFRCPLSLELMLDPVIVASGQTYERLSIQKWLDHGLTVCPKTHQRLTHTNLIPNYTVKAMIANWCEENNVKLPSNSESNISVHMNTPSNHLWPQGLARSCSFGSAHSSNSTSRSSLQTGNAFEKQKGDISSRLSGESNGCQSIETEKFEQQSPAPSYIYSRSESFSSSVSITDYAHPVSKEASEISNEHEIVKELSGEITIGCPASPAIKESGISPWLSGKQFQSPGSKIGVENRNYNNNNNNNNSSSHSKVHSLPVFNLGSDELTTTSYVSKLIEDLHSQSNEVQTRAAEELRLLSKHNMENRILIGQCGAIMPLVSLLYSEVKITQEHAVTALLNLSIYEDNKVLIVEAGAIEPLIHVLKTGNHGAKENSAAALFSLSVIENNKEKIGRSGAVKALVDLLGSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVQLMDPAVGMVDKAVALLANLSTIAEGRLAIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3027 948 Gene3D - 779 855 IPR011989 -
Glsi02g3027 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 785 827 IPR000225 GO:0005515
Glsi02g3027 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 744 786 IPR000225 GO:0005515
Glsi02g3027 948 MobiDBLite consensus disorder prediction 500 531 - -
Glsi02g3027 948 Coils Coil 327 365 - -
Glsi02g3027 948 CDD RING-Ubox_PUB 391 443 IPR045210 -
Glsi02g3027 948 FunFam RING-type E3 ubiquitin transferase 387 463 - -
Glsi02g3027 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 826 867 IPR000225 GO:0005515
Glsi02g3027 948 Gene3D - 856 937 IPR011989 -
Glsi02g3027 948 Pfam U-box domain 390 461 IPR003613 GO:0004842|GO:0016567
Glsi02g3027 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 703 745 IPR000225 GO:0005515
Glsi02g3027 948 Gene3D - 663 778 IPR011989 -
Glsi02g3027 948 SMART arm_5 692 732 IPR000225 GO:0005515
Glsi02g3027 948 SMART arm_5 855 895 IPR000225 GO:0005515
Glsi02g3027 948 SMART arm_5 774 814 IPR000225 GO:0005515
Glsi02g3027 948 SMART arm_5 815 854 IPR000225 GO:0005515
Glsi02g3027 948 SMART arm_5 733 773 IPR000225 GO:0005515
Glsi02g3027 948 Pfam Armadillo/beta-catenin-like repeat 735 772 IPR000225 GO:0005515
Glsi02g3027 948 Pfam Armadillo/beta-catenin-like repeat 777 813 IPR000225 GO:0005515
Glsi02g3027 948 Pfam Armadillo/beta-catenin-like repeat 694 731 IPR000225 GO:0005515
Glsi02g3027 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 464 IPR013083 -
Glsi02g3027 948 PANTHER U BOX DOMAIN-CONTAINING 183 936 - -
Glsi02g3027 948 ProSiteProfiles U-box domain profile. 389 463 IPR003613 GO:0004842|GO:0016567
Glsi02g3027 948 FunFam RING-type E3 ubiquitin transferase 647 941 - -
Glsi02g3027 948 SUPERFAMILY ARM repeat 658 935 IPR016024 -
Glsi02g3027 948 SUPERFAMILY RING/U-box 388 464 - -
Glsi02g3027 948 SMART Ubox_2 393 456 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3027 Glsi-ChrGlsi02 78931002 78938488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3027 156 948 U-box Gene Family AT3G54790 55.013 0.0 754