LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3023	ATGCCCCCTTTGTTATCTTCTCTTGTTGAAATGTTGACTCTTTATCCCTTTTTTGCTTATGACATAACTATGGAATCAGAAAGTGAAAGAAATAATGCCAAAACTGAGAAGATGGGAGATCTTTCAGTTCCCCCTGGTTTTAAATCCCTTACTTCTTTCATGCTAAAAAGGGTTGAAAAGGTTAAAGAAACTGATAAATCTACTAACTTTCTGACTACACCTGAACGTGATGCAATCTGCATGGACACTATATATGAGATGAATGACACTGCTGCATATAAGCCAATCCTTAAGCATCGTCCATGGATACTCTTCAATCAAAGCAACCATGAACCTGAGAAATCTGACACAGAGCATCTTCCTATAGTTGTTCCTTTAAATGCTTGTCGTCCAAAAGGGGTTACTCACGGTTGTCCAGACTGCAGTGATTGTCTGAAGGTAACTGCAAGGTGGCGCCCTGAGGATGCAAGAAGAGATGTCCTTATAGAAGCTCCGATTTTCCGCCCAACAGAAGAGGAATTTAAGGACACACTTAAATATATTGCAAGCATACGTTCCACAGCAGAGCCTTATGGAATTTGTCGTATCATTCCTCCTCCAACCTGGCAACCACCATGTCTTCTTGAAGAAAGGAACAGATGGGAAAGCTCCAAATTTGTTACCCAGATTCAGCAGATTGATGGACTTCAAGTTCAGTGCTTGCAAGAAATTTTGGCCAGCTCTTCTGGAAGTACGAAGACCGAGACTAGAAGAGGAAACCCCGATAATGTTAAAGGCTTTGAGTCTAAACCTGGTCCAACATTCAGTCTCAGTACATTTAAGAAATTTGCTGATAATTTTAAGGCCTTGTACTTCAACTGTAACAATGAGGTCATGGATTCTGATAAAAAGTGGGAGCCTTCTGCGGAGAATCTTGAGGGTGAATTTGGACGAATTGTTCAGAATCCAACTGAAGAAATTGAGGTGTTATGTGGTAAGAATTTGGAGGCTGGAATATTTACCCGTGGATTTCCGACAGTATTTGATCCTCTAAGGGAATTGAATTATCCTGAATGTATGAAATCTGGATGGAACTTGAATAATATGCTTACACTGTCTGGTTCTCTTCTTTCTTTTGAAAACTCTGAGGTCTCTCGCAAATTTTTCCCTCGGATTGATGTTGGAATGTGCTTTTCTTCATTCAACTGGAAAGTAGAAGAGCACTGGTTATACTCATTGCGTTACATGCATTTGGGTGAACCCAAGGTGTGGTATAGTGTCCCAGGAAGATTTGCTGTCGACTTTGAAACAGTAAGGAAAAAGTCTCTCCCAGTTTCATTGGCAGAACATCCTGGCTTGCATGATAATTTGTTATCCTCCACCATATTGAAGTCAGCAGGTATACCAGTATATCGCTGTCTTCAGTATCCTCGGGAGTTTGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTGAGTTTTGCTCCTCTTGAGTGGCTGCTTCCTGGACAGAATGTTGTCGAGCTATATTGCGAACAAAGAAGAAAGACATCAATCTCATATGATAAGCTGTTGCTTGGAGCAGCAAGGAAAGCTGTTATGGCACAATGGGAAATTGAACTGTGTAGGAAGAGCACCCCTGAAAATTTAACTTGGAAAGATGCCTGTGGAATAAATGGGATCTTAGCAAAAGCTTTTGATTCCCGCATAAAGAGTGAAAGTTTGAAGAGGGAATTTCTCTGCACTTCTTTGAAATCAGAGAGAATGGAAAAAGATTTTGATGCTACTTGCAAAAGGGAATGCATAATATGTCTGCGTGATTTACACTTATCTGCCGTAGGTTGTACATGTTCAACAAACAAATTTGCGTGTCTTAATCATGCAAAGCAGCTTTGTTCTTGTACTTGGAGCAACAAATTTGTCCTCTGCCGTTATGAAATCAGTGAGTTGAATGTCCTTCGTCTTGCTTTGGATGGGAAATTAAGTGCAATCCACAAATGGGCTAAAGAGGATCTTGGATTAACTCTTCACTCCGTTGTCTCCACAAGATTGAAACAAACAGCAGGAAATGTGAGTGGTTCAACGTCTTGTTCAGAAAAAAGAGCAGCAATGTTGAATGCACTGAAAAGAAAACGAGATGCAGTAGGGTCCCAAGTTACGGGTACGTCTAGTGGCATTGACGCAGAACTGAAGGCACCTTTACTTCAATCAACACTCTTAGGTGAGTTGAAAGCGCAACAGAAAACGGGGGGGCGCCAATCTGCTACAACATGCATTAACAGAGGGATAGATTCTGCTTCTATCATCAAACCTGATATGACGGCTCGTGCGGGTCAGTCAACAATTTCAAAAAGGGTAGAAGTTGCCCCAAAAGCTTCTACAGTTATTTCAGGTGCAAGAGCAACCTTGGGAACTTATACGTCTTTTCTGTCGGAAAACATGTCATTAGAAGTTTCATCAGAAAGTACGAGCACATCTTCGTCTTCAGAATCCGATGACACTTAA	2514	0.4113	MPPLLSSLVEMLTLYPFFAYDITMESESERNNAKTEKMGDLSVPPGFKSLTSFMLKRVEKVKETDKSTNFLTTPERDAICMDTIYEMNDTAAYKPILKHRPWILFNQSNHEPEKSDTEHLPIVVPLNACRPKGVTHGCPDCSDCLKVTARWRPEDARRDVLIEAPIFRPTEEEFKDTLKYIASIRSTAEPYGICRIIPPPTWQPPCLLEERNRWESSKFVTQIQQIDGLQVQCLQEILASSSGSTKTETRRGNPDNVKGFESKPGPTFSLSTFKKFADNFKALYFNCNNEVMDSDKKWEPSAENLEGEFGRIVQNPTEEIEVLCGKNLEAGIFTRGFPTVFDPLRELNYPECMKSGWNLNNMLTLSGSLLSFENSEVSRKFFPRIDVGMCFSSFNWKVEEHWLYSLRYMHLGEPKVWYSVPGRFAVDFETVRKKSLPVSLAEHPGLHDNLLSSTILKSAGIPVYRCLQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLPGQNVVELYCEQRRKTSISYDKLLLGAARKAVMAQWEIELCRKSTPENLTWKDACGINGILAKAFDSRIKSESLKREFLCTSLKSERMEKDFDATCKRECIICLRDLHLSAVGCTCSTNKFACLNHAKQLCSCTWSNKFVLCRYEISELNVLRLALDGKLSAIHKWAKEDLGLTLHSVVSTRLKQTAGNVSGSTSCSEKRAAMLNALKRKRDAVGSQVTGTSSGIDAELKAPLLQSTLLGELKAQQKTGGRQSATTCINRGIDSASIIKPDMTARAGQSTISKRVEVAPKASTVISGARATLGTYTSFLSENMSLEVSSESTSTSSSSESDDT	837

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3023	837	Pfam	JmjC domain, hydroxylase	387	497	IPR003347	-
	Glsi02g3023	837	MobiDBLite	consensus disorder prediction	242	261	-	-
	Glsi02g3023	837	SUPERFAMILY	Clavaminate synthase-like	263	537	-	-
	Glsi02g3023	837	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	159	750	-	-
	Glsi02g3023	837	Pfam	C5HC2 zinc finger	604	654	IPR004198	-
	Glsi02g3023	837	ProSiteProfiles	JmjC domain profile.	351	514	IPR003347	-
	Glsi02g3023	837	Pfam	jmjN domain	165	198	IPR003349	-
	Glsi02g3023	837	ProSiteProfiles	JmjN domain profile.	164	205	IPR003349	-
	Glsi02g3023	837	SMART	cupin_9	354	514	IPR003347	-
	Glsi02g3023	837	Gene3D	Cupin	149	498	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3023	Glsi-ChrGlsi02	78903438	78908740	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3023	42	684	JUMONJI Transcription Factor Family	AT1G08620	46.999	0.0	582

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Glsi02g3023		JmjC	1.1e-29	CL0029

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g3023	02	78903438	78908740	Glsi02g3023	02	78903438	78908740	ECH

Showing 1 to 1 of 1 entries