Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3023 ATGCCCCCTTTGTTATCTTCTCTTGTTGAAATGTTGACTCTTTATCCCTTTTTTGCTTATGACATAACTATGGAATCAGAAAGTGAAAGAAATAATGCCAAAACTGAGAAGATGGGAGATCTTTCAGTTCCCCCTGGTTTTAAATCCCTTACTTCTTTCATGCTAAAAAGGGTTGAAAAGGTTAAAGAAACTGATAAATCTACTAACTTTCTGACTACACCTGAACGTGATGCAATCTGCATGGACACTATATATGAGATGAATGACACTGCTGCATATAAGCCAATCCTTAAGCATCGTCCATGGATACTCTTCAATCAAAGCAACCATGAACCTGAGAAATCTGACACAGAGCATCTTCCTATAGTTGTTCCTTTAAATGCTTGTCGTCCAAAAGGGGTTACTCACGGTTGTCCAGACTGCAGTGATTGTCTGAAGGTAACTGCAAGGTGGCGCCCTGAGGATGCAAGAAGAGATGTCCTTATAGAAGCTCCGATTTTCCGCCCAACAGAAGAGGAATTTAAGGACACACTTAAATATATTGCAAGCATACGTTCCACAGCAGAGCCTTATGGAATTTGTCGTATCATTCCTCCTCCAACCTGGCAACCACCATGTCTTCTTGAAGAAAGGAACAGATGGGAAAGCTCCAAATTTGTTACCCAGATTCAGCAGATTGATGGACTTCAAGTTCAGTGCTTGCAAGAAATTTTGGCCAGCTCTTCTGGAAGTACGAAGACCGAGACTAGAAGAGGAAACCCCGATAATGTTAAAGGCTTTGAGTCTAAACCTGGTCCAACATTCAGTCTCAGTACATTTAAGAAATTTGCTGATAATTTTAAGGCCTTGTACTTCAACTGTAACAATGAGGTCATGGATTCTGATAAAAAGTGGGAGCCTTCTGCGGAGAATCTTGAGGGTGAATTTGGACGAATTGTTCAGAATCCAACTGAAGAAATTGAGGTGTTATGTGGTAAGAATTTGGAGGCTGGAATATTTACCCGTGGATTTCCGACAGTATTTGATCCTCTAAGGGAATTGAATTATCCTGAATGTATGAAATCTGGATGGAACTTGAATAATATGCTTACACTGTCTGGTTCTCTTCTTTCTTTTGAAAACTCTGAGGTCTCTCGCAAATTTTTCCCTCGGATTGATGTTGGAATGTGCTTTTCTTCATTCAACTGGAAAGTAGAAGAGCACTGGTTATACTCATTGCGTTACATGCATTTGGGTGAACCCAAGGTGTGGTATAGTGTCCCAGGAAGATTTGCTGTCGACTTTGAAACAGTAAGGAAAAAGTCTCTCCCAGTTTCATTGGCAGAACATCCTGGCTTGCATGATAATTTGTTATCCTCCACCATATTGAAGTCAGCAGGTATACCAGTATATCGCTGTCTTCAGTATCCTCGGGAGTTTGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTGAGTTTTGCTCCTCTTGAGTGGCTGCTTCCTGGACAGAATGTTGTCGAGCTATATTGCGAACAAAGAAGAAAGACATCAATCTCATATGATAAGCTGTTGCTTGGAGCAGCAAGGAAAGCTGTTATGGCACAATGGGAAATTGAACTGTGTAGGAAGAGCACCCCTGAAAATTTAACTTGGAAAGATGCCTGTGGAATAAATGGGATCTTAGCAAAAGCTTTTGATTCCCGCATAAAGAGTGAAAGTTTGAAGAGGGAATTTCTCTGCACTTCTTTGAAATCAGAGAGAATGGAAAAAGATTTTGATGCTACTTGCAAAAGGGAATGCATAATATGTCTGCGTGATTTACACTTATCTGCCGTAGGTTGTACATGTTCAACAAACAAATTTGCGTGTCTTAATCATGCAAAGCAGCTTTGTTCTTGTACTTGGAGCAACAAATTTGTCCTCTGCCGTTATGAAATCAGTGAGTTGAATGTCCTTCGTCTTGCTTTGGATGGGAAATTAAGTGCAATCCACAAATGGGCTAAAGAGGATCTTGGATTAACTCTTCACTCCGTTGTCTCCACAAGATTGAAACAAACAGCAGGAAATGTGAGTGGTTCAACGTCTTGTTCAGAAAAAAGAGCAGCAATGTTGAATGCACTGAAAAGAAAACGAGATGCAGTAGGGTCCCAAGTTACGGGTACGTCTAGTGGCATTGACGCAGAACTGAAGGCACCTTTACTTCAATCAACACTCTTAGGTGAGTTGAAAGCGCAACAGAAAACGGGGGGGCGCCAATCTGCTACAACATGCATTAACAGAGGGATAGATTCTGCTTCTATCATCAAACCTGATATGACGGCTCGTGCGGGTCAGTCAACAATTTCAAAAAGGGTAGAAGTTGCCCCAAAAGCTTCTACAGTTATTTCAGGTGCAAGAGCAACCTTGGGAACTTATACGTCTTTTCTGTCGGAAAACATGTCATTAGAAGTTTCATCAGAAAGTACGAGCACATCTTCGTCTTCAGAATCCGATGACACTTAA 2514 0.4113 MPPLLSSLVEMLTLYPFFAYDITMESESERNNAKTEKMGDLSVPPGFKSLTSFMLKRVEKVKETDKSTNFLTTPERDAICMDTIYEMNDTAAYKPILKHRPWILFNQSNHEPEKSDTEHLPIVVPLNACRPKGVTHGCPDCSDCLKVTARWRPEDARRDVLIEAPIFRPTEEEFKDTLKYIASIRSTAEPYGICRIIPPPTWQPPCLLEERNRWESSKFVTQIQQIDGLQVQCLQEILASSSGSTKTETRRGNPDNVKGFESKPGPTFSLSTFKKFADNFKALYFNCNNEVMDSDKKWEPSAENLEGEFGRIVQNPTEEIEVLCGKNLEAGIFTRGFPTVFDPLRELNYPECMKSGWNLNNMLTLSGSLLSFENSEVSRKFFPRIDVGMCFSSFNWKVEEHWLYSLRYMHLGEPKVWYSVPGRFAVDFETVRKKSLPVSLAEHPGLHDNLLSSTILKSAGIPVYRCLQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPLEWLLPGQNVVELYCEQRRKTSISYDKLLLGAARKAVMAQWEIELCRKSTPENLTWKDACGINGILAKAFDSRIKSESLKREFLCTSLKSERMEKDFDATCKRECIICLRDLHLSAVGCTCSTNKFACLNHAKQLCSCTWSNKFVLCRYEISELNVLRLALDGKLSAIHKWAKEDLGLTLHSVVSTRLKQTAGNVSGSTSCSEKRAAMLNALKRKRDAVGSQVTGTSSGIDAELKAPLLQSTLLGELKAQQKTGGRQSATTCINRGIDSASIIKPDMTARAGQSTISKRVEVAPKASTVISGARATLGTYTSFLSENMSLEVSSESTSTSSSSESDDT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3023 837 Pfam JmjC domain, hydroxylase 387 497 IPR003347 -
Glsi02g3023 837 MobiDBLite consensus disorder prediction 242 261 - -
Glsi02g3023 837 SUPERFAMILY Clavaminate synthase-like 263 537 - -
Glsi02g3023 837 PANTHER LYSINE-SPECIFIC DEMETHYLASE 159 750 - -
Glsi02g3023 837 Pfam C5HC2 zinc finger 604 654 IPR004198 -
Glsi02g3023 837 ProSiteProfiles JmjC domain profile. 351 514 IPR003347 -
Glsi02g3023 837 Pfam jmjN domain 165 198 IPR003349 -
Glsi02g3023 837 ProSiteProfiles JmjN domain profile. 164 205 IPR003349 -
Glsi02g3023 837 SMART cupin_9 354 514 IPR003347 -
Glsi02g3023 837 Gene3D Cupin 149 498 - -
Glsi02g3023 837 SMART JmjN_1 163 204 IPR003349 -
Glsi02g3023 837 MobiDBLite consensus disorder prediction 818 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3023 Glsi-ChrGlsi02 78903438 78908740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3023 42 684 JUMONJI Transcription Factor Family AT1G08620 46.999 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi02g3023 JmjC 1.1e-29 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3023 02 78903438 78908740 Glsi02g3023 02 78903438 78908740 ECH