Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3022 ATGGGTCTTAGAGATATCGGTGCCTCACTGCCTCCTGGATTTCGGTTTTATCCGAGTGACGAGGAGTTGGTCTGTCATTACCTTTACAAAAAGATCTCAAATGAGGAAGTTCTGAAGGGTACTTTGGTGGAAATTGACTTGCATACCTGCGAGCCATGGCAACTTCCTGAGGTGGCTAAGCTCAACGCAAGTGAATGGTATTTCTTCAGTTTCCGTGACCGCAAATATGCCACGGGATTCCGGACCAACAGGGCCACGACATCTGGGTATTGGAAAGCAACTGGGAAGGATCGCACGGTGCTTGATCCAATCTCACGTGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAACAGAGCTCCAAATGGTATCAAAACTGGTTGGATCATGCATGAGTTCCGCTTGGAGACCCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTTTTTCACAAAAGCAAATCAGACAACAGTGCCAAACTCATGTTCGACTCTCCACCATCCCTAACTTTGGCTTCATCATCTCCAACCAACCAAACCATGCCTGGTGGGTATAACCAACTTTCCATCTCCTCTATGGCAACCCATATTAACCAACCCAATTCTCTCATGAATTACCTTCACTTTTCTCGGGAAACAAACAATAGCACTATTACTGATCAAATCAGTCCAAGAGGTGATGATGATGGATATGGGCTCTTATGGGACATGGATTTCGAAGAAAATAGTAGCTTCCAAACTGGCGTGGCCTCTAACTTGGACGCAATGAGGTCATTCGATGTTAGTAATAATAGCATGGTCTTGTTATGA 822 0.4562 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKISNEEVLKGTLVEIDLHTCEPWQLPEVAKLNASEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPISREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKSDNSAKLMFDSPPSLTLASSSPTNQTMPGGYNQLSISSMATHINQPNSLMNYLHFSRETNNSTITDQISPRGDDDGYGLLWDMDFEENSSFQTGVASNLDAMRSFDVSNNSMVLL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3022 273 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Glsi02g3022 273 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Glsi02g3022 273 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 204 - -
Glsi02g3022 273 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Glsi02g3022 273 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3022 Glsi-ChrGlsi02 78871048 78874444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3022 6 157 NAC Transcription Factor Family AT1G56010 58.750 2.66e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi02g3022 NAM 2.3e-37 No_clan