Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3017 ATGGATTCTGCGAGGAGTTGGTTGCAGAAGTTTCAGCCACGGGATAAAATGAGGGCTACTTCAAAGAAGAGCGAGAGTAGTGGTGGAGGAAATGAAGATTCAAATGCACAGTTGGATGAAGAAGCTCTTTCCAATATCACGAAGCAGAAGGTTGCAGCGGCGAAGCAGTATATAGAGAACCATTACAAGGAGCAAATGAAGAGCCTTCAGGAGAGGAAGGAGCGTCGAACTATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAAGACCAAAGCAACCTGTTTAAATTTTTGGAGAAAAAGGAAACTGAATACATGCGGCTTCAGAGGCATAAGATGGGCGTTGATGATTTTGAGTTATTGACTATGATTGGCAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAAAAGACAACAGGTCATGTATATGCAATGAAAAAACTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTCAAAGCTGAAAGGAATCTGCTTGCTGAAGTTGACAGCAATTGCATAGTCAAACTTTACTGTTCTTTCCAGGATAATGAGTATCTGTACCTTATTATGGAGTATCTACCTGGTGGGGATGTGATGACTTTACTTATGAGAAAGGATATCTTGACTGAAGATGAAGCTAGATTTTATGTAGCAGAAACGGTTCTAGCTATTGAATCTATACATAAACACAATTATATCCATAGGGATATTAAGCCTGACAATTTATTACTTGATAGATATGGACACTTAAGACTGTCAGATTTTGGACTATGTAAACCATTAGATTGCAGTACGCTTCAAGAACAGGATTTTTCTGTTGGTCAGAATGTGAATGGTTCTACACAGAATGATGAACACCCAGCTCCAAATCGCACGCAACAAGAACAATTACAACACTGGCAAAAGAACAGGAGGACACTTGCTTATTCTACAGTTGGTACGCCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGCTATGGGATGGAATGCGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTAGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCTGAAGAAGCAATGATATCTCCTGAGGCTATAAATTTGATCAGTAAACTTTTGTGTAACGTCAACCAGAGGCTGGGGTCAAAAGGTGCAGGTGAAATAAAGGCTCATCCATTCTTCAAAAATACTGAATGGCATAGGCTATATCAGATGGAAGCTGCATTCATTCCTGAGGTTAATGATGAGTTAGATACTCAAAATTTTGAGAAGTTTGAAGAGTGTGACAGCCAGAGTCAACCAGCGGCAAGAGCTGGTCCATGGAGGAAGATGCTCTCTTCTAAGGACTTAAATTTTGTCGGATACACATATAAGAACTTTGAAATTGTCAATGACTATCAAGTTCCTGGGATGGCTGAGTTGAAAAAGAAAGCCTCCACAGTGAAGAAGCCATCCATCAAGTCGCTTTTTGATGATGAGTCGGAGGTGTCTGAGGCTTCAGATGCGTCTAATAGCAATCACTCTGCTCGAGGAAGCTGGGGTATGTCACGGTGA 1626 0.4071 MDSARSWLQKFQPRDKMRATSKKSESSGGGNEDSNAQLDEEALSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQSNLFKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDNEYLYLIMEYLPGGDVMTLLMRKDILTEDEARFYVAETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLQEQDFSVGQNVNGSTQNDEHPAPNRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEAMISPEAINLISKLLCNVNQRLGSKGAGEIKAHPFFKNTEWHRLYQMEAAFIPEVNDELDTQNFEKFEECDSQSQPAARAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKASTVKKPSIKSLFDDESEVSEASDASNSNHSARGSWGMSR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3017 541 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Glsi02g3017 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi02g3017 541 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Glsi02g3017 541 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Glsi02g3017 541 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Glsi02g3017 541 CDD STKc_NDR_like 118 482 - -
Glsi02g3017 541 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Glsi02g3017 541 MobiDBLite consensus disorder prediction 281 302 - -
Glsi02g3017 541 MobiDBLite consensus disorder prediction 1 41 - -
Glsi02g3017 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 475 - -
Glsi02g3017 541 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Glsi02g3017 541 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi02g3017 541 CDD MobB_NDR_LATS-like 54 115 - -
Glsi02g3017 541 MobiDBLite consensus disorder prediction 23 41 - -
Glsi02g3017 541 MobiDBLite consensus disorder prediction 523 541 - -
Glsi02g3017 541 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3017 541 MobiDBLite consensus disorder prediction 514 541 - -
Glsi02g3017 541 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3017 541 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3017 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Glsi02g3017 541 SUPERFAMILY Protein kinase-like (PK-like) 94 469 IPR011009 -
Glsi02g3017 541 FunFam Non-specific serine/threonine protein kinase 91 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3017 Glsi-ChrGlsi02 78805452 78815451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3017 1 514 AGC Kinase Gene Family AT2G20470 77.649 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Glsi02g3017 Pkinase 2e-63 CL0016