Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3003 ATGGTGAGTAGAATCAGAGAAGGGAGGAGAGGCGAAATCAGCAGGAGTTTGCGGAATATAATGAAGTGTCTATGCTCAGGGGAGCAGTTAAGAAGAGTAGATGATATGGTTCCTTCAGCTGAATCTCTTGCAACCCATTATTATTCAGCGAATGGGAATTCTTGCCAAGACGAACAAGTTAACAAGAAGAAGCCAGATACTGGCAACATAGAAGAAGCTGAATCATCCCTTCGTGAAAGTGGTTTCTTGAACTATGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATATCAGAAAGGAAACATTGAAGCCGCTTTACATGTTTTTGAGGGAATAGATATAGGTGCTGTGACTCCCAAGATCAAAATTTCCCTTACCCCCCCAAGGAGGGAACATCGTCGCAAGAGACATTCCCAGAACTATGCTGCACCCCCAATGGCTATACATGCTGTCGGATTATTGTTGGAAGCAGTCTTCCTCAAAGCAAAATCATTGCAGGCTCTTGGAAGATTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCTGAAGGCTTGCCTGAAAACTTTGGCGCTGAATGTAAATTGCAGGAGACTCTGAGCAAGGCTGTTGAGTTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTAATTTGTCTTACCGGCGGACACTCCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAAGAGTTTGTCGTTTTTCTTCTGTATAGTGGGGGGGAAGCAAGCCCCCCAAATCTCCGTTCCCAAATGGACAGCTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTCTGCTAAGAAAAGTCTCTCTCAAAAGAATTGAGTGGGATCCTTCAATTCTGGACCACCTTACTTTTGCTTTGTCTATTTCTGGGAATTTGACAGTTTTAGCTAATCAATTGAAAGAATTGCTCCCCGGGACCATCAGTCGAAGAGAAAGGTATCATATTCTTGCTCTCTGTTACTATGGAGCCGGTAAGGACTTGGTAGCTCTGGATCTTCTCAGAATATTGTTGAGTAGTAGAGAGGAGCCAAAACATGTTCCAGCTTTGTTAATGGCATCTAAGATTTGTTCTGAGAACCCTAGGCTTGCAGAAGAAGGGGTAAGCTTTGCTTGCAGAGTGCTCGAGAACTTGGATGGAGGATGTGATAAGTTAGAAAGTCTTGCCAATTGCTTACTTGGTGTTTCACTTTCAGCTCATTCAAAATTGGTCATTTCTGATTCTGAGAGGTTTAAGAGACAATCTGAGGCACTTCATGCCCTGGAAACTGCTGGCAGAATGACTAGAACGAGAGACTCCTTTATACTGTATCATCTCAGTTTAGAAAATGCAGAACAAAGAAAGTTGGATGCTGCACTTGAGTATGCAAAATGCCTTACAGAATTGGAAGCTGGGTCTAATGTTAAAGGGTGGCTATTGTTAGCCCGGATATTATCAGCACAAAAACGGTTTTTAGATGCTGAATCTATTATCAATGCTGCTTTGGATCAGACCGGGAAATGGGATCAAGGAGACTTGTTGCGAACTAAAGCTAAACTTCAAATTGCACAAGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAGCTTCTTGCTGTTTTTCAAATTAAAAAAAAAACTTTTGGTTCTGGGAAGAAGCTATATAAGGACAATAGAGATCATGCTAGGAACTTGGAACTGGAAATATGGCATGATCTTGCTTATGTATACATAAACCTATCACAGTGGTGTGATGCCGAGATGTGTCTTTCTAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAACAGGCATACTCTACGAAGCAAAGGGGCTTTACAAGGAGGCTCTAAAAGCATTTCGTGATGCTTTGAACATGGATCCCAACCATGTCCCAAGCTTGATATCCACAGCTGTGGTTCTTAGACGGTGCAGTGATGAATCAAACCCTGCAATAAGAAGCTTTCTAATGGGTGCACTACGTCATGACAGATTGAATGCTTGTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGATTCTTCATTAATGGAAGCTGCGGAATGCTTCGAGGCTGCACACTTTCTTGAAGAAACTGCACCTGTTGAACCTTTCAGATGA 2208 0.4203 MVSRIREGRRGEISRSLRNIMKCLCSGEQLRRVDDMVPSAESLATHYYSANGNSCQDEQVNKKKPDTGNIEEAESSLRESGFLNYEEARALLGRYEYQKGNIEAALHVFEGIDIGAVTPKIKISLTPPRREHRRKRHSQNYAAPPMAIHAVGLLLEAVFLKAKSLQALGRFKEAAQSCKVILDIVESSLPEGLPENFGAECKLQETLSKAVELLPELWKLADCPREANLSYRRTLLHQWNLDAETIAKIQKEFVVFLLYSGGEASPPNLRSQMDSSFVPRNNIEEAILLLMILLRKVSLKRIEWDPSILDHLTFALSISGNLTVLANQLKELLPGTISRRERYHILALCYYGAGKDLVALDLLRILLSSREEPKHVPALLMASKICSENPRLAEEGVSFACRVLENLDGGCDKLESLANCLLGVSLSAHSKLVISDSERFKRQSEALHALETAGRMTRTRDSFILYHLSLENAEQRKLDAALEYAKCLTELEAGSNVKGWLLLARILSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVFQIKKKTFGSGKKLYKDNRDHARNLELEIWHDLAYVYINLSQWCDAEMCLSKSKAIKLYSASRCHATGILYEAKGLYKEALKAFRDALNMDPNHVPSLISTAVVLRRCSDESNPAIRSFLMGALRHDRLNACAWYNLGLLHKAEGTDSSLMEAAECFEAAHFLEETAPVEPFR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3003 735 PANTHER PROTEIN NPG1 21 735 IPR043376 -
Glsi02g3003 735 SMART tpr_5 623 656 IPR019734 GO:0005515
Glsi02g3003 735 SMART tpr_5 533 566 IPR019734 GO:0005515
Glsi02g3003 735 SMART tpr_5 693 729 IPR019734 GO:0005515
Glsi02g3003 735 SMART tpr_5 497 530 IPR019734 GO:0005515
Glsi02g3003 735 SMART tpr_5 155 188 IPR019734 GO:0005515
Glsi02g3003 735 Pfam Tetratricopeptide repeat 628 656 IPR019734 GO:0005515
Glsi02g3003 735 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Glsi02g3003 735 SUPERFAMILY TPR-like 441 562 IPR011990 GO:0005515
Glsi02g3003 735 Gene3D Tetratricopeptide repeat domain 617 723 IPR011990 GO:0005515
Glsi02g3003 735 Gene3D Tetratricopeptide repeat domain 28 616 IPR011990 GO:0005515
Glsi02g3003 735 SUPERFAMILY TPR-like 534 706 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3003 Glsi-ChrGlsi02 78723161 78729731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3003 12 735 Calmodulin-binding Proteins AT4G28600 58.447 0.0 791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0762 11 4817263 4819992 Glsi02g3003 02 78723161 78729731 CCT
Glsi02g3003 02 78723161 78729731 Glsi02g3003 02 78723161 78729731 ECH