Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2994 ATGATTGTTGCTGGGCCATATGCTGGGTTAGGCATGACAACCTTTCAAAAGGCTCCCGGTTTCCTCTTTCATTTACTACTGCTATTATTTCTTCCGTTGAAGATCACCGCATCTTCCACAACGGAAGGAGGAGCTCTTGTCAAATGGAAGAACACTCTATCTCCTCCTCTTCCTTCTTTTCTCAACTCATGGACCCTCACCAACCTCAACAACCTTTGCAACTGGGATGCCATTGTCTGTGACAACACCAACACAACAATCTCACAGATAGATCTCTCTGATGCCGATCTCACTGGGACTCTTACCGGGCTGGATTTTTCTTCTCTTCCCAATCTCACCCACCTCAACCTCAATATCAACAATTTCAGTGGGTCAATTCCATCTACCATTGGTAAACTCGCCAAGCTCACTTTCTTGGACCTGGGAAACAACTTTTTTGATGGCACGCTGCCTTCTGAGCTAGGCCAGCTAAAGGAGCTACAATATCTTAGTTTTTACAGCAACTCTCTCAACGGTACCATTCCCCATCAGCTCACAAATCTTTCAAAGGTATGGTACCTAGACCTTGGATTAAACTTCTTAATATCTCCTGCTGAGTGGTCCCAGTATTCAGGAATGCCATCTTTAACCCACCTCAGTTTGACTCTCAATTCTTTTACATCTGAATTCCCAAGTTTCATACTAGACTGCCAGAACTTGACATACCTTGACATCTCCCAGAATTCTATGACGGGCCTAATACCAGAATCCATGTATACCAATCTGGGTAAGCTTGAATACCTCAATCTCACCAATTGTGGGCTAGAAGGACCCTTGTCAACAAACATCTTCAAGCTTTCTAATTTAAAAGAATTTCGCCTGGGCAGTAACAAGTTTACTGGTAGTATTCCCACAGACTTAGGATTGATATCTGGACTTCAAATTCTTGAATTGAATAACAATTCACTTGGAGGGGAAATTCCTTCCTCACTTGGCAAACTCAAGAATCTAATGAGACTTGACCTCCGTGAGAATTTTTTGAATTCGACAATCCCTTCCGAGCTTGGCTTCTGTACTAATTTAACCTTCCTCAGTTTAGCAGTGAATAATTTGACTGGTCCTTTTCCTTTGTCATTATCTAATCTGACAAAAATATCAGAAATAGGGTTATCAGAAAATTCTTTTTCTGGTCAGATTTCTTCTTCGTTGATTCCCAATTGGACTGCGTTGACCTCTCTGCAACTTCAAAACAATAAATTCACAGGAGAAGTTCCTCCAGAGATCGGCCTGTTGACAAAAGTCATATACCTGTTTCTGTATAATAATGAGTTCTCTGGTCCCATTCCTCAGGAGATTGGAAACTTGAAAGTAATGTCACAGTTAGATCTCTCAGGAAACCAATTCTCAGGTCCAATTCCTCCAACCATTTGGAGTCTTACAAACATTACAACCATTAATCTTTTCTCCAATAGACTCAATGGAACCATTCCCATGGATATTGGAAACTTGACCTCGCTGCAAATTTTTGACGTCAACACTAACTTTCTGCATGGAGAGTTGCCAGAGACCATATCTCAGCTAACTGAGTTACAGTCATTTTCTGTGTTCTCCAATAACTTTTCGGGCAACATTCCAAGAAATTTTGGGAAGTATAGTCCTTTTTTGAGTCGTGTTAGCTTCTCAAACAACAGTTTCTCTGGAGAACTACCACCTGATTTGTGCACTGGTTTCACGCTTATAGTTTTAACTGTCAATAACAACAGCTTTTCTGGGCCCTTGCCAAAGTGCTTGAGAAATTGTTCAGAACTAGTCAGAGTTCGGCTTGATGGAAATAAGTTCACTGGAAACATCACAGAAGCATTTGGAGTCCATCCTAATCTTCTTTTTATCTCACTTAGTCAGAATCAGTTAGTTGGTGAACTCTCTCCTCAGTGGGGTGAATGTGCAAACTTAACCAGGATGGAAATGGAAGGAAATAAAATTGCAGGTAAAATTCCATCTGAGCTTAGTAAGTTGAGCCAATTACATTATCTAAACCTGCACTCCAATGAACTGACTGGCAATATCCCACCTGAAATGGGGAATCTAAGCCAGCTATACATGTTCAACTTGAGCGGCAACCATTTGACAGGACAGATCCCACAGAGTATAGGTAAATTGGCTCAGCTGGATTATCTTGATTTATCAGATAACAACTTCACCGGAAGCATACCGAAAGTTCTCGGTAACCATGGTGGCTTAATGAGCCTGAATTTAAGCCACAACGCTTTGTCTGGGGAGATACCTTATGAGTTAGGCAATCTGTTCTCATTACAGTACTTCTTGGACATCAGCAGCAACTCTCTTTCAGGGCCGATACCTCAAAATCTTCAAAAGCTCACTTCTCTGATGATTCTCAATGTCTCACGCAACCATCTATCTGGGACAATCCCACGATCCTTTTCAAGTATGCTCAGCCTTCAATCTATCGATTTTTCTTACAACAACTTGACGGGTTCAATCCCAACTGGGGGTATTTTCCAAATAGCACCTGCCGAAGTTTATGTTGGGAACTCTGGTTTGTGTGGGGAAGCAGAAGGATTAACTGCTTGCCCCACAGCATCTACCCTAGACAAGACCAAAGGGTTGAACAAAAAGGTTCTTCTTGGGGTTATTATACCTGTTTGTGGGCTATTAATTATAGGGTTGATTGTCCTTGGAATCTTAGTATTCCGTCGGCGGGTCAAACGCCTTGACGAAGAGACCAAAGACACTGAAAAGAGTGAAAATTCTAAAAGCACGGTATGGGGAAGAGATGGAAAATTTACATTTTCTGAAATTGCTAAGGCAACCAATGACTTCAATGAGAAGTACTGCATCGGAAAAGGAGGATTTGGAAGCGTTTATAGAGCAGTATTACCAACAGGTCAAATTGTTGCAGTTAAAAGGCTCAACATCCCAGACTCCAGTGACATTCCAGAAGGGAATCGCCAAAGTTTTGAGAACGAGATAAGAACACTTACAGGAGTGAGGCACCGCAATATCATAAAGTTTTACGGGTTCTGTTCCAGCAAGGGACGCATGTACTTGGTCTACGAATATGTAGACAGAGGTAGCTTGGGAAAAGTGTTATATGGGGAAGAAGGTAAATTGGAACTAAGCTGGCCTACAAGGGTAAAGATTGTACAGGGAATAGCACATTCAATTGCTTACCTGCACAATGATTGTTCCCCGCCAGTAGTGCACCGAGATGTAAAGCTGAATAACATATTATTGGACTCAGATTTCGAGCCCCGCCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCCAACTCGACAACCTGGACCTCGGTTGCTGGGTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACAGATAAGTGCGATGTGTATAGTTTTGGAGTGGTCGCATTGGAGATAGTGATGGGGAAGCACCCTGGAGATATCTTAACTTCAATGTCTTCAATGAAGTACTTGTTATCAATGGAGGATTCACAGGTATTTCTAAAGGACATGCTAGACCAGAGGCTACCACCTCCAATGGGCCAATTAGCCGAAGCAGTGGCGTTCATAGTGACCATAGGCTTGGCATGCACGCGAAACAATCCAGAGTCGAGACCCACGATGCGTTCTGTGGCGCAAGAACTGTCCGCTACAACGCAACCTTGTCTTGATGAGCCATTTGGCACCATTACCATGAGCAAGTTAACGAAGTTTCAAAAGTAG 3720 0.4258 MIVAGPYAGLGMTTFQKAPGFLFHLLLLLFLPLKITASSTTEGGALVKWKNTLSPPLPSFLNSWTLTNLNNLCNWDAIVCDNTNTTISQIDLSDADLTGTLTGLDFSSLPNLTHLNLNINNFSGSIPSTIGKLAKLTFLDLGNNFFDGTLPSELGQLKELQYLSFYSNSLNGTIPHQLTNLSKVWYLDLGLNFLISPAEWSQYSGMPSLTHLSLTLNSFTSEFPSFILDCQNLTYLDISQNSMTGLIPESMYTNLGKLEYLNLTNCGLEGPLSTNIFKLSNLKEFRLGSNKFTGSIPTDLGLISGLQILELNNNSLGGEIPSSLGKLKNLMRLDLRENFLNSTIPSELGFCTNLTFLSLAVNNLTGPFPLSLSNLTKISEIGLSENSFSGQISSSLIPNWTALTSLQLQNNKFTGEVPPEIGLLTKVIYLFLYNNEFSGPIPQEIGNLKVMSQLDLSGNQFSGPIPPTIWSLTNITTINLFSNRLNGTIPMDIGNLTSLQIFDVNTNFLHGELPETISQLTELQSFSVFSNNFSGNIPRNFGKYSPFLSRVSFSNNSFSGELPPDLCTGFTLIVLTVNNNSFSGPLPKCLRNCSELVRVRLDGNKFTGNITEAFGVHPNLLFISLSQNQLVGELSPQWGECANLTRMEMEGNKIAGKIPSELSKLSQLHYLNLHSNELTGNIPPEMGNLSQLYMFNLSGNHLTGQIPQSIGKLAQLDYLDLSDNNFTGSIPKVLGNHGGLMSLNLSHNALSGEIPYELGNLFSLQYFLDISSNSLSGPIPQNLQKLTSLMILNVSRNHLSGTIPRSFSSMLSLQSIDFSYNNLTGSIPTGGIFQIAPAEVYVGNSGLCGEAEGLTACPTASTLDKTKGLNKKVLLGVIIPVCGLLIIGLIVLGILVFRRRVKRLDEETKDTEKSENSKSTVWGRDGKFTFSEIAKATNDFNEKYCIGKGGFGSVYRAVLPTGQIVAVKRLNIPDSSDIPEGNRQSFENEIRTLTGVRHRNIIKFYGFCSSKGRMYLVYEYVDRGSLGKVLYGEEGKLELSWPTRVKIVQGIAHSIAYLHNDCSPPVVHRDVKLNNILLDSDFEPRLADFGTAKLLSSNSTTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIVMGKHPGDILTSMSSMKYLLSMEDSQVFLKDMLDQRLPPPMGQLAEAVAFIVTIGLACTRNNPESRPTMRSVAQELSATTQPCLDEPFGTITMSKLTKFQK 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2994 1239 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 545 861 - -
Glsi02g2994 1239 Gene3D Ribonuclease Inhibitor 199 539 IPR032675 -
Glsi02g2994 1239 Gene3D Phosphorylase Kinase; domain 1 901 1020 - -
Glsi02g2994 1239 SMART serkin_6 940 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2994 1239 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Glsi02g2994 1239 SMART LRR_typ_2 810 835 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 109 132 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 713 737 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 279 303 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 448 472 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 786 809 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 133 157 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 496 520 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 665 689 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 206 230 IPR003591 -
Glsi02g2994 1239 SMART LRR_typ_2 327 351 IPR003591 -
Glsi02g2994 1239 Gene3D Ribonuclease Inhibitor 39 198 IPR032675 -
Glsi02g2994 1239 ProSitePatterns Protein kinases ATP-binding region signature. 946 968 IPR017441 GO:0005524
Glsi02g2994 1239 Gene3D Transferase(Phosphotransferase) domain 1 1021 1223 - -
Glsi02g2994 1239 Gene3D Ribonuclease Inhibitor 546 865 IPR032675 -
Glsi02g2994 1239 SUPERFAMILY RNI-like 320 631 - -
Glsi02g2994 1239 SUPERFAMILY Protein kinase-like (PK-like) 920 1214 IPR011009 -
Glsi02g2994 1239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1066 1078 IPR008271 GO:0004672|GO:0006468
Glsi02g2994 1239 ProSiteProfiles Protein kinase domain profile. 940 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2994 1239 Pfam Leucine rich repeat 667 726 IPR001611 GO:0005515
Glsi02g2994 1239 Pfam Leucine rich repeat 207 268 IPR001611 GO:0005515
Glsi02g2994 1239 SUPERFAMILY L domain-like 571 834 - -
Glsi02g2994 1239 FunFam MDIS1-interacting receptor like kinase 2 39 200 - -
Glsi02g2994 1239 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 444 541 - -
Glsi02g2994 1239 CDD STKc_IRAK 946 1214 - -
Glsi02g2994 1239 SUPERFAMILY RNI-like 90 393 - -
Glsi02g2994 1239 Pfam Leucine Rich Repeat 306 327 IPR001611 GO:0005515
Glsi02g2994 1239 Pfam Protein kinase domain 942 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2994 1239 FunFam MDIS1-interacting receptor like kinase 2 204 398 - -
Glsi02g2994 1239 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 402 1215 - -
Glsi02g2994 1239 FunFam Leucine-rich repeat receptor protein kinase MSP1 903 1020 - -
Glsi02g2994 1239 FunFam MDIS1-interacting receptor like kinase 2 1021 1220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2994 Glsi-ChrGlsi02 78667718 78671666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2994 12 659 Receptor kinase-like Gene Family AT4G08850 32.412 7.53e-86 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g2994 Pkinase 1.1e-48 CL0016