Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2993 ATGCCATTGTTATTCTCATGTAGGGTTAATAAGTCTATCAATACTTGTAGGTTTGCTCCTGCTGTAAGCCTTAGACTTCTTTTAAGGCTTGGGCATGCTCTTCAGAAGCAGTATTCTAATTCCCTGCCAACCTTTCTTGATTTTCCTGTAAATGCCTCCCTTGAGAATAATCACGTAGAAAGCAGTGCCTGCACTATAATGGCATCTGAGGAGTACTGTAAGAAAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGCGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTTGCTGACATCAACATTCATGATCTTGAACCAAAGGTGGCGTGCCAGGTCTCAAAATCGTCTTCACAATTTCCAGAACAACATTCCCAAAGTCATCAGCAGCTTCCCGCTTCATCAGGAGAAAATCGTGTTGGTGCTCCACTTTCTTCCTCAGCAAATTCTGCTCCTTCCAAACCAAGAATGCGTTGGACACCAGAGCTTCATGAGGCCTTCGTGGAGGCTGTCAGCAAACTTGGGGGCAGAGCAACCCCTAAGGGTGTGCTGAAGATTTTGAAAGTTGAAGGCTTAACGATATATCATGTTAAAAGCCACTTGCAGAAGTATAGGACAGCTAGATATAGACCGGAGTCATCTGAAGTTCGTACATGA 666 0.4414 MPLLFSCRVNKSINTCRFAPAVSLRLLLRLGHALQKQYSNSLPTFLDFPVNASLENNHVESSACTIMASEEYCKKNDWQEWADQLISDDDTLTSNWDDLLADINIHDLEPKVACQVSKSSSQFPEQHSQSHQQLPASSGENRVGAPLSSSANSAPSKPRMRWTPELHEAFVEAVSKLGGRATPKGVLKILKVEGLTIYHVKSHLQKYRTARYRPESSEVRT 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2993 221 MobiDBLite consensus disorder prediction 116 157 - -
Glsi02g2993 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677
Glsi02g2993 221 Gene3D - 156 213 - -
Glsi02g2993 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 212 IPR017930 -
Glsi02g2993 221 MobiDBLite consensus disorder prediction 116 159 - -
Glsi02g2993 221 SUPERFAMILY Homeodomain-like 155 209 IPR009057 -
Glsi02g2993 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 126 217 IPR044848 GO:0003700
Glsi02g2993 221 FunFam Myb family transcription factor 156 212 - -
Glsi02g2993 221 Pfam Myb-like DNA-binding domain 159 208 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2993 Glsi-ChrGlsi02 78662947 78664928 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2993 36 219 G2-like Transcription Factor Family AT5G29000 48.925 9.80e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi02g2993 Myb_DNA-binding 6.1e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2993 02 78662947 78664928 Glsi11g0772 11 4855212 4858599 CCT
Glsi02g2993 02 78662947 78664928 Glsi02g2993 02 78662947 78664928 ECH
Glsi02g2993 02 78662947 78664928 Glsi11g0772 11 4855212 4858599 ECH