Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2992 ATGACAACCTTTCAAAAGGCTCCCGCTTTTCTCTTTCACATACTTTTGCTATTCTTTCTTCCGTTGAAGATCACTGCACCTCCAACAACGGAAGCAGAAGCTCTTGTCAAATGGAAGAACACTCTATCTCCTCCTCTTCCTTCCCTTCTCAACTCCTGGTCCCTCACCAACCTCAACAACCTTTGCAACTGGGATGCTATTGTTTGTGACAACATCAACACAACAATCTCACAGATAGATCTCACTGATGCCAATCTCACTGGGACTCTTACAGGGTTGGATTTTTCTTCTCTTCCCAATCTCACCCACCTCAACCTCAATATCAACAATTTCAGTGGATCAATTCCATCTGCCATTGGTAACCTCGCCAAGCTCACTTTCTTGGACCTGGGAAACAACTTTTTTGATGGCACACTGCCTTCTGAGCTAGGCCAGCTAAAGGAGCTTCAATATCTTAGTTTTTACAGCAACTCTCTCAACGGTACCATTCCCCATCAGCTCACAAATCTTTCAAAGGTATGGTACCTAGACCTTGGATTAAACTTCTTAATATCTCCTGCTGAGTGGTCCCAGTATTCAGGAATGCCATCTTTAACCCACCTCAGTTTGACTCTCAATTCTTTTACATCTGAATTCCCAAGTTTCATACTAGACTGCCAGAACTTGACATACCTTGACATCTCCCAGAATTCTATGACAGGCCTAATACCAGAATCCATGTATACCAATCTGGGTAAGCTTGAATACCTCAATCTCACCAATTGTGGGCTAGAAGGACCCTTGTCAACAAACATCTTCAAGCTTTCTAATTTAAAAGAATTTAGCCTGAGCAGTAACAAGTTTACTGGTAGTATTCCCACAGACTTAGGATTGATATCTGGACTTCAAATTCTTGAATTGAATAACAATTCACTTGGAGGGGAAATTCCTTCCTCACTTGGCAAACTCAAGAATCTAATGAGACTTGACCTTCGTGAGAATTTTTTGAATTCGACAATCCCTTCTGAGCTTAGCTTCTGTACTAACTTAACCTTCCTCAGTTTAGCAGTGAATAATTTGACTGGTCCTTTGCCTTTGTCATTATCTAATCTGACAAAAATATCAGAAATAGGGTTATCAGAAAATTCTTTTTCTGGTCAGATTTCTTCTTCGTTGATCTCCAATTGGACTGCATTGGTCTCTCTACAACTTCAACACAATAAATTCACAGGAGAAGTTCCTCCAGAGATCGGCCTATTGACAAAAATCGTATACCTGTTTTTGTATAATAATGAGTTCTCTGGTCCCATTCCTCGGGAGATTGGAAACTTGAAGGTAATGTCACATTTAGAGCTTTCAGGAAATCAATTCTCAGGTCCAATTCCTCCAACCATTTGGAGTCTTACAAACATTACAACCATTAAGCTTTTCTTCAATAAACTCAATGGAACCATTCCCATGGGTATTGGAAACTTGACCTCGCTACAAGTTTTTGAAGTCAACACTAACTCTCTGCATGGAGAGTTGCCGGTGACCATATCTCAGCTAACTGAGTTACGGTCATTTTCTGTGTTCTCCAATAACTTTTCGGGCGACATTCCAAGGAATTTTGGGAAGTACAGTCCTTTTTTGAGTCATGTTAGCTTCTCAAACAACAGTTTCTCTGGAGAACTACCACCTGATTTGTGCACTGGTTTCGCGCTTGAAGTTTTAACTGTGAATAACAACTATTTTTCTGGGCCATTGCCAAAGTGCTTGAGAAATTGTTCAGAACTAGTCAGAGTTCGGCTAGATGGAAATAAGTTCACCGGAAACATCACAGATGCATTTGGGGTTCATCCTAATCTTCTTTTTATCTCACTTAGTGACAATCAGTTAGTTGGTGACCTCTCTCCTAAGTGGGGTGAATGTGCAAACTTAACCAGCATGGAAATGGACGGAAATAAAATTTCAGGTAAAATTCCATCTGAGCTGAGTAAGTTGAGCCGATTGCAAAATCTAAACCTGCACTCCAATGAACTGACTGGCAATATCCCACCTGAACTGGGGAATCTAAGCCAACTATTCATGTTCAACTTGAGCAGCAACCATTTGACAGGACAGATCCCCCAGAGTATAAGTAAATTGGCTCGGCTAAAATATCTTGATTTATCAGATAACAACTTCACCGGCAGCATACCGAAAGAGCTCGGTAACCATGGTGGCCTAATGAGCCTGAATTTAAGCCATAACTTTTTGTCTGGGGAGTTACCTTATGAACTAGGCAATCTGTTCTCACTACAGTACTTATTGGACATCAGCAGCAACTCTCTTTCGGGGCCAATACCTCAAAATTTTCAAAAGCTCACTTCTCTGATGATTCTCAATGTCTCACGCAACCATCTATCAGGGACAATCCCACAATCCTTTTCACGTATGCTCAGCCTTCAATCTGTTGATTTTTCTTACAACAACTTGACGGGTTCAATCCCAACTGGGGGTATTTTCCCAATAGCACCCGCTGAAGCTTATATTGGGAACTCTGGTTTGTGTGGGGAAGCAAAAGGATTAACTGCTTGCCCCACAACATCTACCCCAGATAAGACCGAAGGGTTGAACAAAAAGGTTCTTCTTGGGGTTATTATACCTGTTTGTGGGCTATTAATTATAGGGTTGATTGTCCTCGGAATCCTAGTATTCCGTCGGCAGGTCAAAACCCTTGACGAAGAGACCAAAGACACTGAAAAGAGTGAAAATTCTGTAAACGCGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGAAATTGTTAAGGCAACTAACGACTTCAATGAGAAGTACTGCATCGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCATTATTACCAACAGGTCAAATTGTTGCAGTTAAAAGGCTCAACATCTCAGACTCCAGTGACATTCCAGCAGAGAATCGCCAAAGTTTTGAGAACGAGATAAGAACACTTACAGGAGTGAGGCACCGCAATATCATAAAGTTTTATGGGTTCTGTTCCAGCAAGGGACGCATGTACTTGGTCTACGAATATCTAGACAGAGGTAGCTTGGGAAAAGTGTTATATGGGGAAGAAGGTAAATTGGAACTAAGCTGGCCAACAAGGGTAAAGATTGTACAGGGAATAGCACATTCAATTGCTTACCTGCACAGTGATTGTTCCCCACCAGTAGTGCACCGAGATGTGACGCTGAATAACATACTATTGGACTCAGATTTCGAGCCCCGCCTTGCAGATTTTGGCACAGCAAAGCTACTAAGCTCCAACTCGACAACCTGGACCTCGGTTGCTGGGTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACAGATAAGTGCGATGTATACAGTTTTGGAGTGGTGGCATTGGAGATAGTGATGGGGGAGCACCCTGGAGATCTCTTGACTTCAATGTCTTCAATGAAGTACTCGTCATCAATGGAGGATTTACAGGTATTTCTAAAGGACGTGCTAGACCAGAGGCTACCACCTCCAATAGGCCAATTAGCCGAAGTAGTGGCGTTCATAGTGACCATAGGCTTGGCATGCACGCGAAACAATCCAGAGTCAAGACCGACAATGCGTTCTGTGGCACAAGAACTATCCGCTACATAA 3621 0.4225 MTTFQKAPAFLFHILLLFFLPLKITAPPTTEAEALVKWKNTLSPPLPSLLNSWSLTNLNNLCNWDAIVCDNINTTISQIDLTDANLTGTLTGLDFSSLPNLTHLNLNINNFSGSIPSAIGNLAKLTFLDLGNNFFDGTLPSELGQLKELQYLSFYSNSLNGTIPHQLTNLSKVWYLDLGLNFLISPAEWSQYSGMPSLTHLSLTLNSFTSEFPSFILDCQNLTYLDISQNSMTGLIPESMYTNLGKLEYLNLTNCGLEGPLSTNIFKLSNLKEFSLSSNKFTGSIPTDLGLISGLQILELNNNSLGGEIPSSLGKLKNLMRLDLRENFLNSTIPSELSFCTNLTFLSLAVNNLTGPLPLSLSNLTKISEIGLSENSFSGQISSSLISNWTALVSLQLQHNKFTGEVPPEIGLLTKIVYLFLYNNEFSGPIPREIGNLKVMSHLELSGNQFSGPIPPTIWSLTNITTIKLFFNKLNGTIPMGIGNLTSLQVFEVNTNSLHGELPVTISQLTELRSFSVFSNNFSGDIPRNFGKYSPFLSHVSFSNNSFSGELPPDLCTGFALEVLTVNNNYFSGPLPKCLRNCSELVRVRLDGNKFTGNITDAFGVHPNLLFISLSDNQLVGDLSPKWGECANLTSMEMDGNKISGKIPSELSKLSRLQNLNLHSNELTGNIPPELGNLSQLFMFNLSSNHLTGQIPQSISKLARLKYLDLSDNNFTGSIPKELGNHGGLMSLNLSHNFLSGELPYELGNLFSLQYLLDISSNSLSGPIPQNFQKLTSLMILNVSRNHLSGTIPQSFSRMLSLQSVDFSYNNLTGSIPTGGIFPIAPAEAYIGNSGLCGEAKGLTACPTTSTPDKTEGLNKKVLLGVIIPVCGLLIIGLIVLGILVFRRQVKTLDEETKDTEKSENSVNAVWGRDGKFTFSEIVKATNDFNEKYCIGKGGFGSVYRALLPTGQIVAVKRLNISDSSDIPAENRQSFENEIRTLTGVRHRNIIKFYGFCSSKGRMYLVYEYLDRGSLGKVLYGEEGKLELSWPTRVKIVQGIAHSIAYLHSDCSPPVVHRDVTLNNILLDSDFEPRLADFGTAKLLSSNSTTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALEIVMGEHPGDLLTSMSSMKYSSSMEDLQVFLKDVLDQRLPPPIGQLAEVVAFIVTIGLACTRNNPESRPTMRSVAQELSAT 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2992 1206 ProSitePatterns Protein kinases ATP-binding region signature. 935 957 IPR017441 GO:0005524
Glsi02g2992 1206 Gene3D Ribonuclease Inhibitor 383 480 IPR032675 -
Glsi02g2992 1206 Pfam Leucine Rich Repeat 295 316 IPR001611 GO:0005515
Glsi02g2992 1206 SMART LRR_sd22_2 340 366 - -
Glsi02g2992 1206 SMART LRR_sd22_2 702 723 - -
Glsi02g2992 1206 SMART LRR_sd22_2 268 289 - -
Glsi02g2992 1206 SMART LRR_sd22_2 146 172 - -
Glsi02g2992 1206 SMART LRR_sd22_2 316 339 - -
Glsi02g2992 1206 SMART LRR_sd22_2 413 439 - -
Glsi02g2992 1206 FunFam MDIS1-interacting receptor like kinase 2 193 387 - -
Glsi02g2992 1206 SMART LRR_typ_2 316 340 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 775 798 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 702 726 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 98 121 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 268 292 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 437 461 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 485 509 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 122 146 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 654 678 IPR003591 -
Glsi02g2992 1206 SMART LRR_typ_2 195 219 IPR003591 -
Glsi02g2992 1206 CDD STKc_IRAK 935 1203 - -
Glsi02g2992 1206 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Glsi02g2992 1206 SUPERFAMILY RNI-like 502 816 - -
Glsi02g2992 1206 Pfam Protein kinase domain 931 1201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2992 1206 Gene3D Transferase(Phosphotransferase) domain 1 1010 1206 - -
Glsi02g2992 1206 Gene3D Phosphorylase Kinase; domain 1 889 1009 - -
Glsi02g2992 1206 SUPERFAMILY Protein kinase-like (PK-like) 912 1203 IPR011009 -
Glsi02g2992 1206 FunFam MDIS1-interacting receptor like kinase 2 1010 1206 - -
Glsi02g2992 1206 Gene3D Ribonuclease Inhibitor 482 849 IPR032675 -
Glsi02g2992 1206 Pfam Leucine rich repeat 655 715 IPR001611 GO:0005515
Glsi02g2992 1206 Pfam Leucine rich repeat 757 812 IPR001611 GO:0005515
Glsi02g2992 1206 Pfam Leucine rich repeat 196 257 IPR001611 GO:0005515
Glsi02g2992 1206 ProSiteProfiles Protein kinase domain profile. 929 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2992 1206 SUPERFAMILY RNI-like 79 404 - -
Glsi02g2992 1206 PANTHER LEUCINE RICH REPEAT KINASE 2 482 1205 - -
Glsi02g2992 1206 Gene3D Ribonuclease Inhibitor 288 382 IPR032675 -
Glsi02g2992 1206 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Glsi02g2992 1206 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Glsi02g2992 1206 FunFam Leucine-rich repeat receptor protein kinase MSP1 892 1009 - -
Glsi02g2992 1206 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Glsi02g2992 1206 SUPERFAMILY L domain-like 384 479 - -
Glsi02g2992 1206 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 534 850 - -
Glsi02g2992 1206 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 434 530 - -
Glsi02g2992 1206 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1055 1067 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2992 Glsi-ChrGlsi02 78647914 78651634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2992 31 648 Receptor kinase-like Gene Family AT4G08850 32.742 6.42e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g2992 Pkinase 1.8e-46 CL0016