Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2987 ATGGCACCCAATCCCAAAGTGGCAGCAGCCTATCGTGCTATGACAGTTCTTGGGATTGATGAATTTAAAGTGAAACCAGTACTGAAGAAACTTCTTAAATTGTACGATAAGAACTGGGAACTTATTGAAGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGAGCAGGAAAATGAGGAAGGAGAGATGGAGGATGAAGATGCTCAGATGCAGGATGAGCCAGTGCGACCTTTGAAGAGGTTTCGTTTAAGAGTGATTCCTCCTGAACCACCAAATCGAAGAGACTTTCTAATGAGGAATGATGCAACTTTAAAATATGATGGCCATGGCACTTCAGATGAAGTTAGAGGTGAAGATCTTTGTGATTCATCAAATGAAGTGAACCATGAGGTTGCTACTGTCCAACAAGAATGTTCTTCTAACATAGAGATAGCCTCTTCATCACAAGGAGAGGTAAAAATTTCTCTGAGCTGCAGTGCTTTTGGGAGACCAGATTTTCATTTGCCTAGTCGAGATCAACTTATAAAAATGATGGAGGATAAATGTCTGCGATCATATAAAATCACTGACCCAAAATTTTCTGTCATGAAACTATTGAGAGATATGTGTGACTGCTTGTTGGAATTTGGAACTGATTCAAATGATAATTCACAGGAAGGATCTGAAATGGTAACACCAAGACCAAGTCTTAATAATGTGAGGAAGGAATCTAAGGCATGTGATGCTGTGAGTCTTGGAGGCAATATAGAAGATTTGGGCATGCATTCTTGCATTTCAAATGGATCAATTAATGTTCAGTCTTCTGCTGCTTTGGTTGCATCTCACATTCCCATTTCTTCTCCCTGTCCGAGTGGTATGGATGATGCCGTTCTAGTTGCTAAGATGGTCAGAGCAAATGAGTTTCCAGAAAGTGATGGCAGAAAGAGACTCGAGCAGCCTAAATCACCAAATTCAGGTAGTTTGGTGGTTGTTACACAGCATCAGCTTACTCCTGAGGATCTAAGGTCTCTTCATGGTGTTATTGACCTTACAAAAGGAGAAGAAAGTGTCATGATTCCATGGGTAAATGAAACTACTAATGATTTCCCCTCACCATTTAATTATACCCCACGAAGTTATGTGTTTGGAGACGCTTATGTTAACATGTTTCTTTCTCACATCGGGTATGAGGATTGCTGTTCAACTTGTTTGGGCAATTGTCTCTTGTCATCTACACCTTGTGCGTGTGCAAATAAATCTGGGGGTGGATATGCATATACACCAGAAGGCCTAGTGAAGGAAGAGTTCTTGGAAGAGTGCATTACCATTAGCCACTACCCTCAACAACGCCAGTTCTATTGTAAAGACTGCCCACTTGAAAGAGCAAAGAATGGTGATTGTTTAGAACCATGTAAAGGACACTTAAAGAGAAAGTTTATCAAAGAGTGCTGGGTAAAATGTGGCTGTGTGAAACAGTGTGGCAATCGGGTGTTTCTTACATCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGAGCTGCCAAAAGGTGCATTTGTGTGTGAGTTTATCGGAGAAATATTAACCATCAAAGAATTGCTTGAGAGGAACTTGCAATGCACCAAAAATGGGAAATATACGTACCCAATTCTATTAGATGCAGATTGGGATTCAGGAGTTGTGAAGGATAAAGAAGCTCTTTGCTTGGATGCAGCATCTTATGGGAATGTTGCTAGGTTTATTAATCACAGATGTTTGGATGCGAACTTAATTGAGATCCCCGTCGAAGTTGAGACCCCAGATCATCACTACTATCATCTTGCCTTCTTCACCTCCAGAAAAATAGTAGCGCAGGAAGAGCTCACTTGGGATTATGGCATCGACTTTGACGACCCAGAGCATCCTATCAAGCCGTTCTGTTGCAGATGTGGTAGTAAATTCTGCAGAAACATGAAGCGATCAAGTAGTAAGTTCATTGTTCTTGTTATGGTTCTTCTTTTGCTTGGTTGTGTCTATCTGTGTGGTAGGGAAACCTCTTCTTGCCTTCTTGTAGAAACTGCAAGGCATGAGAATGAGCCTCATAATTCTGGTTGTCTCCTCTACACCAGAAAGGATCCATTAGATCCGCGTCAATGGCAAGATGATAGCCTGCTCATATAA 2145 0.4121 MAPNPKVAAAYRAMTVLGIDEFKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEQENEEGEMEDEDAQMQDEPVRPLKRFRLRVIPPEPPNRRDFLMRNDATLKYDGHGTSDEVRGEDLCDSSNEVNHEVATVQQECSSNIEIASSSQGEVKISLSCSAFGRPDFHLPSRDQLIKMMEDKCLRSYKITDPKFSVMKLLRDMCDCLLEFGTDSNDNSQEGSEMVTPRPSLNNVRKESKACDAVSLGGNIEDLGMHSCISNGSINVQSSAALVASHIPISSPCPSGMDDAVLVAKMVRANEFPESDGRKRLEQPKSPNSGSLVVVTQHQLTPEDLRSLHGVIDLTKGEESVMIPWVNETTNDFPSPFNYTPRSYVFGDAYVNMFLSHIGYEDCCSTCLGNCLLSSTPCACANKSGGGYAYTPEGLVKEEFLEECITISHYPQQRQFYCKDCPLERAKNGDCLEPCKGHLKRKFIKECWVKCGCVKQCGNRVFLTSEGKGWGLRTLEELPKGAFVCEFIGEILTIKELLERNLQCTKNGKYTYPILLDADWDSGVVKDKEALCLDAASYGNVARFINHRCLDANLIEIPVEVETPDHHYYHLAFFTSRKIVAQEELTWDYGIDFDDPEHPIKPFCCRCGSKFCRNMKRSSSKFIVLVMVLLLLGCVYLCGRETSSCLLVETARHENEPHNSGCLLYTRKDPLDPRQWQDDSLLI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2987 714 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Glsi02g2987 714 CDD SET_SETDB-like 366 621 - -
Glsi02g2987 714 SUPERFAMILY SET domain 352 644 IPR046341 -
Glsi02g2987 714 Gene3D - 1 60 IPR043017 -
Glsi02g2987 714 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 678 IPR025776 -
Glsi02g2987 714 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 651 - -
Glsi02g2987 714 SMART preset_2 342 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi02g2987 714 SMART set_7 488 627 IPR001214 GO:0005515
Glsi02g2987 714 Pfam SET domain 500 621 IPR001214 GO:0005515
Glsi02g2987 714 Pfam Pre-SET motif 346 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi02g2987 714 Coils Coil 55 75 - -
Glsi02g2987 714 Gene3D SET domain 345 646 IPR046341 -
Glsi02g2987 714 ProSiteProfiles SET domain profile. 488 621 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2987 Glsi-ChrGlsi02 78607914 78625224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2987 475 646 C2H2 Transcription Factor Family AT2G23740 36.702 3.13e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi02g2987 Pre-SET 6.2e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0087 11 659000 664770 Glsi02g2987 02 78607914 78625224 CCT
Glsi02g2987 02 78607914 78625224 Glsi02g2987 02 78607914 78625224 ECH