Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2981 ATGTCTGTCTCCTCGGCCTTCGACATGCGCCGTTCACCGTCGACCAAACACCAAAGAGATCGGGACGGACCTGAGACTGCCACGTGGCACACCACGGCAACCTCCGGAATCGAAATCGTATTGGTGGTGGCGGCGCTGGCGGCGGTTTTGGAGCTTACATACTCCGGTGGTTCTACTTGTGGGTCGATGTCAACAGTGTCAAAGGAAGATAATTTAGTCATGTCTTCTGAGGATTCTTCATGCCCCGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCGTCCTGTTGGAAAGCCCCAGACAGTTTCCACGGGTCAATATGCTAGAATATTAACGGCTAAAGATTTTCCTTCTTCTGCGTCTTCATTAGTGTCATCAACCTCCTCCTCTTCTTCTTCCTCTTCCTCTCCTTCCTCATTGAGCAGGGCTAACGTCACAGCTGGAACCAAGAGAACTGCCGATTCTGTTGTCGCTACTAATGGCCCCAGTCAGGCTGTAGGATGGCCTCCTCTTGGAACATATCGAATGAATAGCTTTAATAACCATGGAATCTCACCATCAACTGAAATATTCAACTCTATGGTTGAGAAAAGTAAGAGCAGTAATACAGTGGTAAGGAAGAATACTGACAATGGCAGTGATAAAGACAACATTAGTTCCAAAGATAAAGGGCACCTCAGGAGTTCCTGGTTTGTGAAGGTAAATATGGATGGGATGCCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAAGCTTAGCACAAACTTTGGAGGAGATGTTTAATGAATCCACTGCAGGCGTCTCTTGCAAAATAGGATCAAATGGAGAGGATCATGGCATTACACTTGGAGTTGAAAGACCGTCAGAATCGATGGATGTGTCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTACCTTGGGGGATGTTCCTTAGCTCTGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTAGCACCAAGGTTGGAAGAAAAGAATAGCAGACAGAGAGGCGAGCACATATAG 1083 0.4645 MSVSSAFDMRRSPSTKHQRDRDGPETATWHTTATSGIEIVLVVAALAAVLELTYSGGSTCGSMSTVSKEDNLVMSSEDSSCPDESELELGLGLSLSRPVGKPQTVSTGQYARILTAKDFPSSASSLVSSTSSSSSSSSSPSSLSRANVTAGTKRTADSVVATNGPSQAVGWPPLGTYRMNSFNNHGISPSTEIFNSMVEKSKSSNTVVRKNTDNGSDKDNISSKDKGHLRSSWFVKVNMDGMPIGRKVDLSAHSSYESLAQTLEEMFNESTAGVSCKIGSNGEDHGITLGVERPSESMDVSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQRGEHI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2981 360 Gene3D - 228 350 - -
Glsi02g2981 360 SUPERFAMILY CAD & PB1 domains 228 336 - -
Glsi02g2981 360 ProSiteProfiles PB1 domain profile. 232 340 IPR000270 GO:0005515
Glsi02g2981 360 MobiDBLite consensus disorder prediction 125 165 - -
Glsi02g2981 360 MobiDBLite consensus disorder prediction 125 171 - -
Glsi02g2981 360 MobiDBLite consensus disorder prediction 12 26 - -
Glsi02g2981 360 Pfam AUX/IAA family 123 347 IPR033389 -
Glsi02g2981 360 MobiDBLite consensus disorder prediction 1 30 - -
Glsi02g2981 360 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 86 343 IPR003311 GO:0005634|GO:0006355
Glsi02g2981 360 MobiDBLite consensus disorder prediction 199 225 - -
Glsi02g2981 360 FunFam Auxin-responsive protein 228 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2981 Glsi-ChrGlsi02 78565317 78571125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2981 236 347 B3 DNA Binding Superfamily AT1G59750 31.250 1.64e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi02g2981 AUX_IAA 5.7e-57 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2981 02 78565317 78571125 Glsi11g0783 11 4908404 4911517 CCT
Glsi02g2981 02 78565317 78571125 Glsi02g2981 02 78565317 78571125 ECH