Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2971 ATGGCTATCTCACAATTGCTCAATAAAATCTCACCTTCATCGTTAGCATCAGGATCACCGAATACCCTCTTGAGAACGATAATAGGATTGCCTGTGTTGGAACTAGCGGCAATCTGTGTGAACTTGACTATTCTTCTTGTATTTCTCTTCATAATCTCAGCCAGACAGATATTTGTGTGTGTTGGTCGAATTCGAATAAGTAAGGACAATTCGGCTGGCAATCCAAATCCAATTCGTCATAGTATTGATGGAGAAATACGTGACGTTAGAATCGGTACCGGTTTCAAATTGTCATTGTTATGTTGTTTCTATGTCCTCTTTGTGCAAGTTTTGGTGTTAGGATTCGATGCGGCTGCTTTGATTAGGGGAGCGGCTAATGGGAAAACTGTGGATTGGTCGCTTCTTTCTTTGCCAGCTGCACAGGGTTTAGCTTGGTTTGTATTAAGCTTCTCGGCTTTGCATTGCAAATTCAAGGCGTCCGAAAAATTTCCATTTTTGTTGAGGGTATGGTGGTTTGTCTCGTTTGTGATTTGTTTGTTTACTTTATACGTTGATGGGAGAGTATTTTTGGTGGAAGGTTCAAAACACCTTTCCTCTCATGTTGTGGCAAATTTTGCTGTCACTCCGGCTCTTGCTTTTCTGTTTATTGTTGCAATTCGAGGTGTTACTGGCATACAAGTTTATAGAAACTCTGATCTTCAAGAGCCGTTGCTTGAAGAAGAAGCAGGGTGTCTCAATATTACTCCTTACGGCGATGCTGGGCTTTTTAGTTTGGCCACTCTTTCTTGGCTGAACCCGCTTCTTTCCATTGGTGCGAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTCTTGCACCAAATGATCGAGCTAAGACCAATTATAAGGTTTTGCATTTTAACTGGGAGAGATTGAAGGCTGAAAGTCCTTCAAAGCAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAAAGAGGCAGCTTGTAACGCCGTCTTTGCTGGTGTGAATACTCTTGTCTCGTATGTGGGTCCATATATGATTAGTTACTTCGTTGATTACTTAGGTGGTAAAGAGACTTTCCCGTATGAAGGGTATATCCTTGCGGGGACATTCTTTACTGCAAAACTTTTGGAGACTTTAACAACTAGGCAGTGGTATTTGGGGGTGGACATCTTGGGTATGCATGTTAGGTCAGCTCTAACAGCAATTGTATATCGAAAGGGACTCAGACTCTCAAGCTTGGCCAAGCAAAGTCACACAAGTGGGGAGATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTTTACAAATTATTCTTGCCCTTGCAATTTTGTACAAGAATGTTGGAATTGCTTCAATTGCGACATTGATTGCTACAATCTTTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATACAAGAAAATTTTCAAGACAAATTAATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATCCTCAAGCTGCAAGCTTGGGAGAATAGATATCGAATAAAATTGGAGGAGATGCGTGGAGTAGAGTTCAAGTGGCTCCGGAAAGCCCTCTACTCTCAAGCTTTCATTACTTTCATCTTTTGGAGCTCTCCTATATTTGTTTCAGCTATCACTTTTGGCACTTCGATATTGTTGGGTAATAAGTTGACTGCTGGGGAAGTTCTTTCTGCTCTGGCTACTTTCAGGATCCTCCAAGAACCTTTGAGGAATTTTCCTGACTTGGTATCGACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTAATTTCCTGCAGGATGAAGAATTGCAAGAAGATGCAACTATCATATTGCCACGAGGAATTTCTAACATTGCCATAGAGATTAAGGATGGAGTCTTCTGCTGGGACCCTTCTTCTAGGCCTACTCTATCAGGGATACATATGAAAGTGGAAAGGGGGATGCGTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGAGTCTGTGGCTCTGCTGCATATGTCTCCCAATCAGCATGGATTCAATCAGGAAATATAGAAGAAAATATCCTTTTTGGAAGCCCGATGGATAAAGCAAAGTACAAGAGTGTTCTTCATGCTTGTTCACTGAAGAGGGACCTGGAGCTTTTCTCACATGGAGACCAGACTATTATAGGTGATAGAGGTATCAACCTGAGTGGAGGACAGAAGCAGCGGGTGCAGCTTGCACGAGCTCTTTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTTAGTGCTGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTACATATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACTCATCAAGTGGAATTTCTTCCTGCAGCTGATATGATACTGGTTCTTAAAGAAGGCCGCATAATACAGGCAGGAAAATACGACGATCTTTTACAAGCAGGAACTGATTTTAATACTCTAGTTTCAGCTCACCATGAAGCCATTGAGGCTATGGATATTCCTAATCACTCCTCAGAAGATTCAGATGAAAATTTATCCTTGGAAGCATCTGTTATGACCAGTAAGAAATCCATTGAATCTGCAAAAGATATTGACAGTTTAGCAAAGGAAGTGCAAGAGGGTTCTTCAGCTTCAGATAAGAAAGCAAAAAAGGAGAAGAAGAAAGCAAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAGGAGGAGAGGGTAAGAGGTAGAGTCAGCATGAAGGTTTACCTGTCATACATGGCTGCAGCATATAAAGGCTTATTGATTCCACTTATAATCATGGCACAAACATTATTTCAGTTCCTTCAAATTGCTAGTAATTGGTGGATGGCTTGGGCAAACCCTCAAACTGAAGGAGACCAACCTAAAACAACTCCTATGGTTCTTCTTCTTGTGTACATGGCTCTTGCTTTTGGAAGCTCTTGGTTTATATTTATAAGGGCTGTTTTGGTTGCTACATTTGGTCTAGCAGCCGCACAGAAGCTATTTTTGAAGATGCTTAGAAGTGTTTTCCTTGCACCAATGTCTTTTTTTGACTCCACCCCAGCTGGAAGGATATTGAATCGTGTATCGATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTAGGTGGGTTTGCTTCGACAACAATACAACTTATTGGCATTGTTGGTGTAATGACGAAGGTTACCTGGCAAGTTTTGCTTCTAGTTGTTCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGTATTGTAAGCATCCAGAAATCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACTATCAGAGGTTTCGGACAAGAAAAAAGGTTCATGAAGAGAAACCTCTATCTTCTGGACTGTTTTGCACGACCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTGTCCACCTTTGTATTTGCTTTCTGCATGATATTACTAGTGAGCTTTCCACATGGAAGTATTGACCCTAGCATGGCTGGACTTGCCGTGACATATGGCCTGAATCTAAATGCACGCCTATCACGGTGGATACTTAGCTTTTGCAAGCTTGAAAATAAAATAATATCTATTGAAAGGATTTATCAATACAGCCAAATTCCTAGTGAAGCACCAGCTATCATTGAAGATACTCACCCTCCATCCACATGGCCTGAGATTGGGACTATTAGAATAATTGATTTAAAGGTTCGTTACAAGGAAAATCTTCCCTTGGTGCTTCATGGAATATCCTGCACATTTCCTGGCGGGAAGAAGATTGGAATAGTTGGACGCACTGGCAGTGGAAAATCTACTATGATTCAGGCATTATTTCGATTGATTGAACCAGAAGGTGGGAGTATCCTTATAGACAACATTGATATTTCAAGAATTGGCCTTCATGACCTTCGAAGCCGTCTGAGTATAATACCACAAGATCCAACCTTATTTGAAGGGACCATACGAGGCAATCTTGATCCTCTTGAAGAGCACTCAGATAAAGAGATCTGGGAGGCACTAGATAAATCTCAGCTTGGGGATATTATCCGCGGGAAAGAACAAAAGCTTGATACACTAGTGATAGAGAATGGAGATAATTGGAGCGTAGGGCAGCGGCAACTTGTTGCCCTGGGCCGTGCTTTACTTAAGCAGTCAAGGATACTTGTCCTCGATGAAGCAACAGCATCAGTTGATAGCGCCACTGACAATCTTATCCAGAAGATTATTCGAACAGAGTTTAGAGACTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTAGTTCTGGTACTTAGTGATGGCCGAGTTGCGGAGTTTGACAGTCCATCACGACTGTTAGAGGAGAAGTCATCCATGTTTCTGAAGTTGGTGACTGAGTATTCATCACGGTCAAGTGGCATACCAGATTTTTGA 4599 0.4194 MAISQLLNKISPSSLASGSPNTLLRTIIGLPVLELAAICVNLTILLVFLFIISARQIFVCVGRIRISKDNSAGNPNPIRHSIDGEIRDVRIGTGFKLSLLCCFYVLFVQVLVLGFDAAALIRGAANGKTVDWSLLSLPAAQGLAWFVLSFSALHCKFKASEKFPFLLRVWWFVSFVICLFTLYVDGRVFLVEGSKHLSSHVVANFAVTPALAFLFIVAIRGVTGIQVYRNSDLQEPLLEEEAGCLNITPYGDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLLAPNDRAKTNYKVLHFNWERLKAESPSKQPSLAWAILKSFWKEAACNAVFAGVNTLVSYVGPYMISYFVDYLGGKETFPYEGYILAGTFFTAKLLETLTTRQWYLGVDILGMHVRSALTAIVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIILALAILYKNVGIASIATLIATIFSIVVTVPVARIQENFQDKLMAAKDERMRKTSECLRNMRILKLQAWENRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAITFGTSILLGNKLTAGEVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISNFLQDEELQEDATIILPRGISNIAIEIKDGVFCWDPSSRPTLSGIHMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKSVLHACSLKRDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADMILVLKEGRIIQAGKYDDLLQAGTDFNTLVSAHHEAIEAMDIPNHSSEDSDENLSLEASVMTSKKSIESAKDIDSLAKEVQEGSSASDKKAKKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIMAQTLFQFLQIASNWWMAWANPQTEGDQPKTTPMVLLLVYMALAFGSSWFIFIRAVLVATFGLAAAQKLFLKMLRSVFLAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTKVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDTHPPSTWPEIGTIRIIDLKVRYKENLPLVLHGISCTFPGGKKIGIVGRTGSGKSTMIQALFRLIEPEGGSILIDNIDISRIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGDIIRGKEQKLDTLVIENGDNWSVGQRQLVALGRALLKQSRILVLDEATASVDSATDNLIQKIIRTEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDSPSRLLEEKSSMFLKLVTEYSSRSSGIPDF 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2971 1532 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Glsi02g2971 1532 SMART AAA_5 668 849 IPR003593 GO:0016887
Glsi02g2971 1532 SMART AAA_5 1312 1497 IPR003593 GO:0016887
Glsi02g2971 1532 MobiDBLite consensus disorder prediction 910 941 - -
Glsi02g2971 1532 Gene3D - 637 869 IPR027417 -
Glsi02g2971 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 969 1239 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g2971 1532 Gene3D ABC transporter type 1, transmembrane domain 928 1267 IPR036640 GO:0005524|GO:0016020
Glsi02g2971 1532 Gene3D ABC transporter type 1, transmembrane domain 302 625 IPR036640 GO:0005524|GO:0016020
Glsi02g2971 1532 Pfam ABC transporter 659 793 IPR003439 GO:0005524
Glsi02g2971 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g2971 1532 CDD ABCC_MRP_domain2 1284 1504 - -
Glsi02g2971 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 863 IPR027417 -
Glsi02g2971 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 864 IPR003439 GO:0005524
Glsi02g2971 1532 FunFam ABC transporter C family member 5 930 1267 - -
Glsi02g2971 1532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1523 - -
Glsi02g2971 1532 Coils Coil 921 941 - -
Glsi02g2971 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1276 1516 IPR027417 -
Glsi02g2971 1532 FunFam ABC transporter C family member 5 627 873 - -
Glsi02g2971 1532 Pfam ABC transporter transmembrane region 970 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g2971 1532 Pfam ABC transporter transmembrane region 332 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g2971 1532 SUPERFAMILY ABC transporter transmembrane region 966 1266 IPR036640 GO:0005524|GO:0016020
Glsi02g2971 1532 FunFam ABC transporter C family member 10 311 624 - -
Glsi02g2971 1532 SUPERFAMILY ABC transporter transmembrane region 317 624 IPR036640 GO:0005524|GO:0016020
Glsi02g2971 1532 Pfam ABC transporter 1303 1451 IPR003439 GO:0005524
Glsi02g2971 1532 Gene3D - 1269 1522 IPR027417 -
Glsi02g2971 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1286 1520 IPR003439 GO:0005524
Glsi02g2971 1532 FunFam ABC transporter C family member 3 1269 1521 - -
Glsi02g2971 1532 CDD ABCC_MRP_domain1 642 841 - -
Glsi02g2971 1532 CDD ABC_6TM_ABCC_D2 967 1261 IPR044726 GO:0140359
Glsi02g2971 1532 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2971 Glsi-ChrGlsi02 78526333 78533707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2971 642 857 Calmodulin-binding Proteins AT2G36910 30.638 2.39e-19 93.2