Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2949 ATGGAAGACGATGAATACCCATTACCTACATCTTCTGGGCTACCTCGCACGAAGAAGCCCTCCATGCCAGAACATGATATCATGGAGCTCTTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAACCAACGACCTGTCAGGAAAACGCCGCCGGAGAGGTACACGGACAGTATAATTCCTGCCGGGCCATCTACGGCGAGGGAGATTCGACCCTCTCAACCGGAAGTGGAACACTATCACAACCATCATCTCTTCATGCAAGAAGATGAAATGACTTCCTGGCTTCACTGTCCCATCGTCGATGATCCTCCCTTGGATCACAATTTCTGCGCCGATATCCTCTACTCACCGCCGCCACCGACGAACAACAACAACAACAACAGAATTAACGACAGTACCATGCAAACCCCTGTCCGTACATCACAAGTAACGGAAAACCGGCAGCCGTCCAGGATGGTAGCTGCTCGACCGCCGATTCCGCCAACGAGGAAACCGGAGCAGGTGCAGACAAAAATACCGAACTTCGCGCACTTCTCGAAACACAATGCGAGAGTCGAACCACCAGGGCCGTCGAGTTCGAAGACCATGGTGAAGGAATCGACGATGGTGGATTCATGCGAAACTCCGGCAGTGGTGGCGTCGGCTTCCAGGATTTCGGAGACTGTCAGAAACTCGCTGGAGCCAACAGAAGGCGATCCCGCTCGCGGGAGCATGAGCACTGCCGGAATTGCGGTGACGTCGGCCGGCGGAGAAACGGGAGGGAGGGAAGTGACAACGTGCGAGATGACAGTCACATCATCACCGGGTGGTTCGAGTGGTAGTGCTGAACCGGCTCGCAGACTGCCGGCGGAAGACCGGAAGCGGAAGTGCCGGGAACGCGAGGAATCCGAGTGTCACAGCGAGGATGTGGATTTTGAATCTGGTGAAGCAAAAAGACAAATTTGTGGATCAACGTCTACAAAGAGATCTCGCGCTGCAGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGAGATAGGATCAATGAGAAGATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACCTGAAGTCACTGCAGTTACAGGTGCAGATGATGTCCATGGGATGTGGCATGGTGCCTATGATGTATCCTGGAATCCAGCAGTATATGCCTCCGATGGGAATGGGGATTGGAGTGGGTATGGGCATGGAAATGGGAATGAACAGGCCACTCATGCCATTTCCCAATATGTTAGCTGGTTCGGCTTTGCCAGCAGCAACTGCAGCTGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCTGTATGCCCCATATGTCTGCCCCTGATTCATCCAGAATGCAACCACCAATTCAATCTGATAATATGTTTCCTTCACTTGTCAACCCTGATCCAAATCAGTCACGGATCCCAAACTTCACTGATCCCTATCAGCAATACCTCGGTCCCCAACAGATGCATCTACATTTAATGCAGGCAATGAACAACCCAAATGTCAGCAAGCCAAGTACCAGTAAGAGCCATGAAAATGCAGAAAATCATCAGCCAGAAGGAACCTGA 1611 0.5164 MEDDEYPLPTSSGLPRTKKPSMPEHDIMELLWQNGQVVMQSQNQRPVRKTPPERYTDSIIPAGPSTAREIRPSQPEVEHYHNHHLFMQEDEMTSWLHCPIVDDPPLDHNFCADILYSPPPPTNNNNNNRINDSTMQTPVRTSQVTENRQPSRMVAARPPIPPTRKPEQVQTKIPNFAHFSKHNARVEPPGPSSSKTMVKESTMVDSCETPAVVASASRISETVRNSLEPTEGDPARGSMSTAGIAVTSAGGETGGREVTTCEMTVTSSPGGSSGSAEPARRLPAEDRKRKCREREESECHSEDVDFESGEAKRQICGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMYPGIQQYMPPMGMGIGVGMGMEMGMNRPLMPFPNMLAGSALPAATAAAAHLGPRFPVPPFCMPHMSAPDSSRMQPPIQSDNMFPSLVNPDPNQSRIPNFTDPYQQYLGPQQMHLHLMQAMNNPNVSKPSTSKSHENAENHQPEGT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2949 536 MobiDBLite consensus disorder prediction 506 536 - -
Glsi02g2949 536 MobiDBLite consensus disorder prediction 1 22 - -
Glsi02g2949 536 MobiDBLite consensus disorder prediction 280 305 - -
Glsi02g2949 536 CDD bHLH_AtPIF_like 325 388 IPR047265 -
Glsi02g2949 536 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
Glsi02g2949 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 403 IPR036638 GO:0046983
Glsi02g2949 536 Coils Coil 331 351 - -
Glsi02g2949 536 FunFam Basic helix-loop-helix transcription factor 320 383 - -
Glsi02g2949 536 Gene3D - 320 383 IPR036638 GO:0046983
Glsi02g2949 536 SMART finulus 331 380 IPR011598 GO:0046983
Glsi02g2949 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Glsi02g2949 536 MobiDBLite consensus disorder prediction 264 305 - -
Glsi02g2949 536 MobiDBLite consensus disorder prediction 119 169 - -
Glsi02g2949 536 PANTHER TRANSCRIPTION FACTOR PIF3 15 478 IPR044273 GO:0003700|GO:0006355
Glsi02g2949 536 MobiDBLite consensus disorder prediction 506 523 - -
Glsi02g2949 536 MobiDBLite consensus disorder prediction 119 150 - -
Glsi02g2949 536 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2949 Glsi-ChrGlsi02 78271195 78274549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2949 3 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.455 3.49e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g2949 HLH 6.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2949 02 78271195 78274549 Glsi11g0815 11 5152083 5155427 CCT
Glsi02g2949 02 78271195 78274549 Glsi02g2949 02 78271195 78274549 ECH