Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2941 ATGGCCGGAAAAGGAGAGGGTCCTGCTATCGGAATCGATCTCGGAACCACGTACTCCTGCGTCGGGGTCTGGCAACATGATCGCGTTGAGATTATTGCAAACGATCAGGGTAACAGGACCACGCCGTCTTACGTCGGCTTCACTGACTCCGAACGTTTGATCGGTGATGCGGCTAAGAACCAGGTCGCCATGAACCCCACAAACACAGTCTTTGATGCCAAGAGGTTGATTGGTCGTAGATTCACTGATACCTCTGTTCAAAATGACATGAAGTTGTGGCCTTTTAAGGTCATTTCTGGCCCTGGTGACAAGCCAATGATCGTAGTCAACTACAAGGGTGAAGAGAAGCAATTTGCTGCAGAGGAAATATCTTCTATGGTACTGATGAAGATGCGTGAGATTGCTGAGGCATACCTTGGCTCCACAATCAAGAATGCTGTCGTTACTGTCCCTGCATACTTTAATGACTCCCAGCGTCAAGCCACAAAGGATGCTGGTGTCATTGCTGGTCTTAATGTCATGCGAATTATTAATGAGCCTACTGCTGCTGCCATTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTCGGCGAGAAGAATGTCTTGATTTTTGATCTTGGTGGTGGTACTTTTGATGTCTCTTTACTCACTATTGAAGAGGGTATCTTTGAGGTGAAAGCCACAGCTGGGGACACCCATCTGGGAGGTGAGGATTTTGATAACAGGATGGTGAACCACTTTGTCCAGGAGTTCAAGAGAAAGCACAAGAAGGATATCAGTGGCAACCCCAGAGCACTTAGGAGGTTGAGGACGGCCTGTGAGAGGGCTAAGAGAACTCTATCATCCACTGCCCAGACCACAATTGAAATTGATTCTCTGTATGAGGGAGTTGATTTCTACTCCCCCATCACTCGTGCCAGATTTGAGGAGCTCAATATGGATCTCTTCAGGAAATGTATGGAACCAGTTGAGAAATGTTTAAGAGATGCAAAGATGGATAAGAGGACTATCCATGATGTTGTCCTTGTAGGTGGTTCCACCAGAATTCCCAAGGTTCAACAACTTCTGCAAGATTTCTTTAATGGGAAGGAGCTCTGCAAGAGCATTAATCCCGATGAGGCTGTTGCATATGGTGCTGCTGTCCAGGCTGCCATCTTAAGTGGTGAGGGTAATGAGAAGGTCCAGGATCTACTACTCTTGGATGTGACCCCGCTCTCTCTTGGTTTGGAGACTGCTGGTGGGGTGATGACTGTGTTGATCCCCAGGAACACCACTATCCCAACCAAGAAAGAGCAAGTTTTCTCAACCTATTCTGACAACCAGCCTGGTGTGTTGATCCAAGTTTATGAAGGCGAGAGAACAAGGACTAGGGATAACAATTTGTTGGGCAAATTTGAACTCTCAGGCATTCCTCCTGCTCCTCGAGGAGTCCCACAAATTACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCCGAGGATAAAACTACCGGCCAGAAGAACAAGATCACCATCACAAATGACAAGGGTAGACTATCAAAGGAGGAGATCGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCTGAAGATGAAGAGCATAAAAAGAAGGTTGAAGCAAAGAATGCGTTGGAGAACTATGCATATAACATGAGGAATACTGTGAAGGATGAGAAGATTGGAGGAAAACTTGATCCAGCTGACAAGAAAAAGATTGAGGATGCCATCGAGCAGGCTATCCAGTGGCTAGACAGCAACCAGCTTGCAGAGGCTGATGAATTTGAAGACAAGATGAAGGAACTGGAAAGCATCTGCAACCCTATCATCGCCAAGATGTACCAGGGTGGTGCGGCTCCTGACATGGGTGGTGCGATGGATGATGATGCTCCTTCTGGTGGAAGTGGTGCTGGCCCGAAGATTGAGGAAGTCGACTAA 1947 0.4694 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFTDTSVQNDMKLWPFKVISGPGDKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGGKLDPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGAAPDMGGAMDDDAPSGGSGAGPKIEEVD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2941 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Glsi02g2941 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Glsi02g2941 648 Gene3D - 71 126 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Glsi02g2941 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Glsi02g2941 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Glsi02g2941 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 583 IPR013126 GO:0005524|GO:0140662
Glsi02g2941 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Glsi02g2941 648 FunFam Heat shock 70 kDa 391 545 - -
Glsi02g2941 648 FunFam Heat shock 70 kDa 235 318 - -
Glsi02g2941 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Glsi02g2941 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Glsi02g2941 648 MobiDBLite consensus disorder prediction 620 648 - -
Glsi02g2941 648 Gene3D - 545 619 IPR029048 -
Glsi02g2941 648 Gene3D - 192 366 - -
Glsi02g2941 648 Gene3D - 10 384 - -
Glsi02g2941 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Glsi02g2941 648 FunFam Heat shock protein 70 10 196 - -
Glsi02g2941 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Glsi02g2941 648 Coils Coil 521 541 - -
Glsi02g2941 648 FunFam Heat shock 70 kDa protein 539 648 - -
Glsi02g2941 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Glsi02g2941 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Glsi02g2941 648 FunFam Heat shock 70 kDa protein 197 259 - -
Glsi02g2941 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Glsi02g2941 648 FunFam Heat shock 70 kDa protein 71 126 - -
Glsi02g2941 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2941 Glsi-ChrGlsi02 78248160 78250940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2941 1 648 Calmodulin-binding Proteins AT3G12580 92.166 0.0 1225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2941 02 78248160 78250940 Glsi11g0824 11 5199780 5202642 CCT
Glsi02g2941 02 78248160 78250940 Glsi11g0824 11 5199780 5202642 ECH
Glsi02g2941 02 78248160 78250940 Glsi02g2941 02 78248160 78250940 ECH
Glsi11g0824 11 5199780 5202642 Glsi02g2941 02 78248160 78250940 ECH