Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2935 ATGCGATTCAGGCGAGAAGCTGTGCGGGTTTTTGTGTCTGCTCCAATAATCAAAAGACATGATCTATTCTCCCTGGAGACGGCGGATGGGGTATATCTTATTATTAAAGGTTTCATTAATGAGCTGCGCACTAGGGAAAATGGCGTTCCTTCTGAGGTTTTCACACATTTTCTATTTGGCTTTCCCCCAGACTGGGAATGCTATGCTGTAAACTGCTTTAAAGAAGAAGTTACCACTGGCATTGATACAGGAAATATTCTTACTTCTAAAGGATCACCAATTGAATCAGAAAATTTGCATAATGCTGTGGAAAAATCTAGTCCAATTTTTATGCATTCTCTTTCACAAGAAGAAACCTCAGGGGATTATGAGAAGTCACTCCTTGAAGATAAATTTGTGTCTGAGGAGATGGGTGATGCTAATGCTGCTTGTGGTAATGCCTCGAATGGACGTGGCAGATTGCATAATATTAAAAGCTGTCAACATAAGAAGCCTGCTTCTGGAAGCTCCGCATCAGGGGCCATGGAAAACCCTGATGGAGAGGGACTGAGAAGTCCAGTAACACCTATTAAATCATGGGGAGAAATGAATGAGTCATCAGAACAGTTTGTTGGAGAATCAGTATCCAGAAAATCTAGAACATTGTCAACTAATACTGAAAGCCAAAGTTGTACAGAGAAAGTGGTAGTCCTTGGGTTATCTAGAACAGAAAAGACCAAGTCTGAAAGAAAAATGACTAAGTGTACTTCAGCTGATTCTAAAAGAAAAATGGCTAAGTCTATTTCAGCTGACTCCAGAGAGCAAAGCATATCTATGAAGAGGACTAACAAGAAATTAAATTTTGATACAAATGTATGTCCTATAACAAATGGAAGGAAGGAGAAATTGCCCACTGTTTCTCCAGAATCATTGAATTTCAGGAGATCAAGATCTGGTAGGCTGCTTCTTCCCCCCTTAGAGTTCTGGCGCAATCAGATGCCAGTTTATGATGCGGACCACAACATTACAGAAATCCAGGAAGGTGCATCTTTTATATCACCTAGCAGAGGAAGTGGAGCACAATCCCAGAAAAAGCGAAGGCGGGACTCCTTTAAGTGCATCGCTCTCGGAATTTCTGTCACTTTCTCAGTGAAAATGTCGGGTCGTGGAAAAGGAGGCAAAGGTTTGGGCAAGGGAGGAGCCAAGAGGCACAGAAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCTGCGATTCGCCGCTTGGCTAGAAGAGGTGGAGTTAAGAGGATTAGCGGTCTTATCTACGAGGAGACTCGTGGTGTCTTGAAGATTTTTCTCGAGAACGTTATTCGTGATGCTGTGACTTATACTGAGCATGCTAGGAGGAAGACAGTTACCGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGTAGGACATTGTACGGTTTCGGTGGTTGA 1446 0.4295 MRFRREAVRVFVSAPIIKRHDLFSLETADGVYLIIKGFINELRTRENGVPSEVFTHFLFGFPPDWECYAVNCFKEEVTTGIDTGNILTSKGSPIESENLHNAVEKSSPIFMHSLSQEETSGDYEKSLLEDKFVSEEMGDANAACGNASNGRGRLHNIKSCQHKKPASGSSASGAMENPDGEGLRSPVTPIKSWGEMNESSEQFVGESVSRKSRTLSTNTESQSCTEKVVVLGLSRTEKTKSERKMTKCTSADSKRKMAKSISADSREQSISMKRTNKKLNFDTNVCPITNGRKEKLPTVSPESLNFRRSRSGRLLLPPLEFWRNQMPVYDADHNITEIQEGASFISPSRGSGAQSQKKRRRDSFKCIALGISVTFSVKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2935 481 PRINTS Histone H4 signature 418 438 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 PRINTS Histone H4 signature 455 467 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 PRINTS Histone H4 signature 383 394 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 PRINTS Histone H4 signature 467 478 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 PRINTS Histone H4 signature 440 454 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 PRINTS Histone H4 signature 398 417 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 Gene3D Histone, subunit A 380 481 IPR009072 GO:0046982
Glsi02g2935 481 Pfam Centromere kinetochore component CENP-T histone fold 420 474 IPR035425 -
Glsi02g2935 481 SUPERFAMILY Histone-fold 381 480 IPR009072 GO:0046982
Glsi02g2935 481 SMART h44 394 468 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 MobiDBLite consensus disorder prediction 236 262 - -
Glsi02g2935 481 FunFam Histone H4 380 481 - -
Glsi02g2935 481 CDD H4 396 479 IPR001951 GO:0003677|GO:0030527
Glsi02g2935 481 MobiDBLite consensus disorder prediction 236 270 - -
Glsi02g2935 481 Pfam SANTA (SANT Associated) 6 67 IPR015216 -
Glsi02g2935 481 PANTHER HISTONE H4 379 480 - -
Glsi02g2935 481 MobiDBLite consensus disorder prediction 160 187 - -
Glsi02g2935 481 ProSitePatterns Histone H4 signature. 393 397 IPR019809 GO:0000786|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2935 Glsi-ChrGlsi02 78217576 78223097 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi02g2935 CENP-T_C 4.7e-07 CL0012