Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2932 ATGGCGGCAACGAGGCGACTCCGGCACCTGCAAGCCCAACCGGCGAACAAGATCTGCGTTGATTGCTCTCAGAAGAACCCCCAATGGGCTTCCGTTTCCTACGGAGTCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCCTCGGCGTCCATATATCATTCGTTCGATCCGTCACTATGGACTCCTGGTCCGACATCCAGATCAAAAAGATGGAAGCAGGCGGTAACGAGAACCTCAACGCCTTCCTTGCCCAGTATGGTATCTCCAAGGAGACCGATATCGTCACCAAGTATAATACCAATGCAGCTAGCATTTATAGGGATCGAATTCAGGCCCTCGCTGACGGACGACCATGGCGGGATCCACCTGTCGTCAAGGAGAATCTTGGCCCTGGGAGGAGTAAGCCTCCCTTGGCAAAAAGTAAGAATGATGGAGGCTGGGATAATTGGGATAACGATGACGGGTTCACATCTTCCAATGATCTCAGGCGCAACCAGTCCACGGGGAATTTTAGAGGGGTCAATGGAGGTGCCGCAGGTGGCGTGCCCGTGAGATCGAGGTCGACGGAGGATATTTACACGCGGTCGCAATTGGAGGCCTCCGCTGCTAACAAGGAGGGCTTTTTCGCTCGGAAGATGGTGGAGAACGATTCACGTCCCGAAGGGATTCCGCCCTCGCAAGGAGGCAAGTACGTTGGGTTTGGATCTAGTCCAGCGCCTTCCCGGATGAATAATCCGCAAAGCGATGTCTTCTCCGTTGTTTCTCAGGGATTTGGTAAATTATCCTTGGTTGCTGCCTCTGCGGCTCAGTCTGCTGCTACTGTTGTTCAGGCTGGCACTAAAGAGATTACTACTAAGGTAAAGGATGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCACTCAGAAGACATCAGAGATTGGACAAAGGACATGGGGGATCATGAAAGGGGTCATGGCTGTGGCTTCCCAGAAGGTTGATGAGTACACCAGAGAAAACACCAATTGGAAGACTGATAACTGGGAACGAAATGAAAATGATCGCAATGGTTACTATCAAGAATATAAACAAGAGAATAAAGGTTGGAATTCTTCTCCCGTAGGAGGACAATCTTCATCTGGTGGGCAGATTAATACTCACCAATCAAGCTCTTGGGATGATTGGGACCGCAAAGAAACTAAGAAGGAAGAACCAGCAAAAGGATCAGCCCCCCATGCATCAGGTGGACAATTTAATACCTACAGTTCAAGCTCTTGGGATGATTGGGACAACAAAGATACTAGGAAGAAAGAACCAGCTAAGGGATCAGCTCCCAATAACAGTGATGGTTGGGCTGGCTGGGATGATTGCAAGGATGATGAATATGATAATTCCTACCAGAGTGCATCACATAAGAAAGCTGTTGGTCATAATGGGAAGTCAGATGACAGCTGGACAGGAGGAGGCTTTCTCTAA 1467 0.4935 MAATRRLRHLQAQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNENLNAFLAQYGISKETDIVTKYNTNAASIYRDRIQALADGRPWRDPPVVKENLGPGRSKPPLAKSKNDGGWDNWDNDDGFTSSNDLRRNQSTGNFRGVNGGAAGGVPVRSRSTEDIYTRSQLEASAANKEGFFARKMVENDSRPEGIPPSQGGKYVGFGSSPAPSRMNNPQSDVFSVVSQGFGKLSLVAASAAQSAATVVQAGTKEITTKVKDGGYDYKVNETVNVVTQKTSEIGQRTWGIMKGVMAVASQKVDEYTRENTNWKTDNWERNENDRNGYYQEYKQENKGWNSSPVGGQSSSGGQINTHQSSSWDDWDRKETKKEEPAKGSAPHASGGQFNTYSSSSWDDWDNKDTRKKEPAKGSAPNNSDGWAGWDDCKDDEYDNSYQSASHKKAVGHNGKSDDSWTGGGFL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2932 488 SUPERFAMILY ArfGap/RecO-like zinc finger 4 108 IPR037278 -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 388 405 - -
Glsi02g2932 488 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Glsi02g2932 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 407 IPR044519 GO:0005096|GO:0016192
Glsi02g2932 488 Gene3D Arf GTPase activating protein 1 123 IPR038508 -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 117 189 - -
Glsi02g2932 488 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Glsi02g2932 488 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 84 IPR001164 GO:0005096
Glsi02g2932 488 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Glsi02g2932 488 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Glsi02g2932 488 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Glsi02g2932 488 MobiDBLite consensus disorder prediction 153 174 - -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 425 439 - -
Glsi02g2932 488 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Glsi02g2932 488 CDD ArfGap_ArfGap1 3 117 - -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 363 488 - -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 410 424 - -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 363 387 - -
Glsi02g2932 488 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2932 Glsi-ChrGlsi02 78203969 78206949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2932 5 87 C2H2 Transcription Factor Family AT4G05330 50.000 1.99e-22 96.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2932 02 78203969 78206949 Glsi11g0832 11 5255728 5259032 CCT
Glsi02g2932 02 78203969 78206949 Glsi02g2932 02 78203969 78206949 ECH