Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2907 ATGAAGAGACAGGGAGATAGCGTGGGAACAGAGAGCTTCGACTTAGCCGATTGTTTAATGCTGCTCTCTCGTGCCAAACAATCAAAGCCCCTTAAAAGCTTAGCCACTGTAGAATTTGAATGCAAGACTTGCAACCGCAAGTTCTCGTCGTTTCAAGCACTTGGTGGCCACAGGGCCAGCCACAAGAGGTCCAAACTAGATAAAGCACAGGTCAAATTTCCGAGCTTAGGAAATAAACCCAAGATGCATGAGTGCTCCATTTGTGGTCTGGAATTCTCTCTGGGCCAAGCACTGGGAGGTCACATGAGGAAGCATAAATCTGATCTCAACCAAGGGTTTTCTTCTATAAACCAGGTCGTCGCTAAAGTTCCAGTTCTAAAGAGATCCGATAGTACGAGGGTTTTGTGTTTGGACCTCAACTTAACGCCTCTGGAGAATGACCTCAAGTTATTGTTTGGAAATATGGCACCTAAAGTTGATGCCTTTATCTGA 492 0.4533 MKRQGDSVGTESFDLADCLMLLSRAKQSKPLKSLATVEFECKTCNRKFSSFQALGGHRASHKRSKLDKAQVKFPSLGNKPKMHECSICGLEFSLGQALGGHMRKHKSDLNQGFSSINQVVAKVPVLKRSDSTRVLCLDLNLTPLENDLKLLFGNMAPKVDAFI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2907 163 SUPERFAMILY beta-beta-alpha zinc fingers 39 105 IPR036236 -
Glsi02g2907 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Glsi02g2907 163 Pfam C2H2-type zinc finger 83 107 - -
Glsi02g2907 163 Pfam C2H2-type zinc finger 39 63 - -
Glsi02g2907 163 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Glsi02g2907 163 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Glsi02g2907 163 Gene3D Classic Zinc Finger 37 105 - -
Glsi02g2907 163 SMART c2h2final6 83 105 IPR013087 -
Glsi02g2907 163 SMART c2h2final6 39 61 IPR013087 -
Glsi02g2907 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Glsi02g2907 163 PANTHER ZINC FINGER PROTEIN ZAT5 9 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2907 Glsi-ChrGlsi02 78058532 78059023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2907 11 160 C2H2 Transcription Factor Family AT2G37430 49.689 6.61e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2907 zf-C2H2_6 3.7e-09 CL0361