Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2906 ATGATCATGAAGAGACAGAGAGAACATGAAGCAACAGAGAGCTTAGTTCTGGCGAACTCTCTGATGCTTCTCTCGCAACCACCCCAGAAAAGTTCGTCGACTCAACTATTTGAATGCAAGACCTGCAACCGCAAGTTCTCGTCGTTTCAAGCGCTTGGTGGCCACAGAGCCAGCCACAAGAGGCCAAAACTAGACGGAGAATCAGACCAAAAGGCACAGACTAATAAGCCCAGAATGCATGAGTGCTCCATTTGTGGTCTGAAATTCTCACTGGGCCAGGCTCTGGGAGGGCATATGAGAAAGCATAGAGCCGTCATGAACGAAGGGTTTCGGTCTATAAATGAGGTAGTTGCCAAAGTCCCAGTTCTGAAGAGATCGAATAGTAAGAGGGTTATGTGCTTAGATTTGAACTTAACACCTCTGGAGAATGACTTGAAGTTACTGTTTGGGAAGAAGGCGCCTGAAGTTCGTCTCTCTTTGTGCTGA 486 0.4712 MIMKRQREHEATESLVLANSLMLLSQPPQKSSSTQLFECKTCNRKFSSFQALGGHRASHKRPKLDGESDQKAQTNKPRMHECSICGLKFSLGQALGGHMRKHRAVMNEGFRSINEVVAKVPVLKRSNSKRVMCLDLNLTPLENDLKLLFGKKAPEVRLSLC 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2906 161 MobiDBLite consensus disorder prediction 58 76 - -
Glsi02g2906 161 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Glsi02g2906 161 SMART c2h2final6 80 102 IPR013087 -
Glsi02g2906 161 SMART c2h2final6 37 59 IPR013087 -
Glsi02g2906 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Glsi02g2906 161 Gene3D Classic Zinc Finger 33 61 - -
Glsi02g2906 161 Gene3D Classic Zinc Finger 65 130 - -
Glsi02g2906 161 MobiDBLite consensus disorder prediction 53 76 - -
Glsi02g2906 161 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Glsi02g2906 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Glsi02g2906 161 SUPERFAMILY beta-beta-alpha zinc fingers 36 102 IPR036236 -
Glsi02g2906 161 Pfam C2H2-type zinc finger 37 62 - -
Glsi02g2906 161 Pfam C2H2-type zinc finger 80 104 - -
Glsi02g2906 161 PANTHER ZINC FINGER PROTEIN ZAT5 5 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2906 Glsi-ChrGlsi02 78056409 78056894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2906 3 160 C2H2 Transcription Factor Family AT2G37430 47.159 1.28e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2906 zf-C2H2_6 3.5e-09 CL0361