Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2882 ATGAAGCATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCCGATGATGCAAGATATAACCTAGATAACCGTGAGGTGGATGGAAGTCGTATCATTGTGGAATTTGCAAAAGGGGGTCCCCGCGGTGCCCGAGAATACTTGGGTAGAGGTCCTCCTCCGGGATCTGGGCGCTGCTTTAACTGTGGCATTGATGGCCATTGGGCTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAATGTTACCGCTGTGGTGAAAGAGGTCATATAGAACGGAACTGCAAGAATAGTCCCAAGAAACTGAGTGGCCGTGGAAGTAGTTATTCACGTTCCCCGGTCAGGTCACGTTCCCCTGTCAGGTCACGTTCTCCTCGTCGTGGCAGAAGCCGGGATCGCAGTTACAGCCGGGAGCGCAGCTATAGTCGATCAAGATCCCCTGTCCGAAGGGAACGAAGCCCTGTCCGTGAAGATCGATCACAGAGTCCTCGTTACAGAAGCCCAGAACCCAAACATAGTCCTCCATTGTCCAAGACAAGGAAGCGTAGTCCAACACCTGATGAAGGCAGTCCACAAAAGATAGGAGATGCATCCCCTGGGAATGGTAGGCTGTTGACCCAGCAAGATGGATCTGACTATAGTGATGGTCCTAGGAGGAGTAGAAGTCCTGTTAGCCCAATAAGGGACAGCTCAAAAACCAATGGTCGCGGCCACAGTGCCAGCCCTAGGGATGATAGGAGCCCCATCGATGACGATGATGACACCCGCCATTCTCCAAGGGGCAGTGAGTCGCCTTGA 798 0.5213 MKHDFAFVEFSDPRDADDARYNLDNREVDGSRIIVEFAKGGPRGAREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSGRGSSYSRSPVRSRSPVRSRSPRRGRSRDRSYSRERSYSRSRSPVRRERSPVREDRSQSPRYRSPEPKHSPPLSKTRKRSPTPDEGSPQKIGDASPGNGRLLTQQDGSDYSDGPRRSRSPVSPIRDSSKTNGRGHSASPRDDRSPIDDDDDTRHSPRGSESP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2882 265 SUPERFAMILY Retrovirus zinc finger-like domains 50 98 IPR036875 GO:0003676|GO:0008270
Glsi02g2882 265 Gene3D - 1 48 IPR012677 -
Glsi02g2882 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 33 IPR000504 GO:0003723
Glsi02g2882 265 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 Pfam Zinc knuckle 59 74 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 Pfam Zinc knuckle 80 97 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 MobiDBLite consensus disorder prediction 238 265 - -
Glsi02g2882 265 MobiDBLite consensus disorder prediction 129 187 - -
Glsi02g2882 265 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 50 78 - -
Glsi02g2882 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Glsi02g2882 265 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Glsi02g2882 265 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 161 - -
Glsi02g2882 265 Gene3D - 79 131 - -
Glsi02g2882 265 Gene3D - 50 78 - -
Glsi02g2882 265 ProSiteProfiles Zinc finger CCHC-type profile. 81 97 IPR001878 GO:0003676|GO:0008270
Glsi02g2882 265 MobiDBLite consensus disorder prediction 93 265 - -
Glsi02g2882 265 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2882 Glsi-ChrGlsi02 77907803 77909711 Dispersed/Wgd