Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2854 ATGTTTCCTCTATCCATAACCCTGAGACACAAGTCTCGTCACTGTTCTCAGCTCTTCAAGAAAAGTGAGCATGCATGCGAGAATCTTGTTTTAACGCCAACTCTAAGCAACAATGGATGTGAAAAGTTAACAACAAATCTGAGGATGAACCAGCAGAAGAACGATTTACAATTTTATGTGAAACCATTTAGTAAGCAAGTTACAACAGAAAATCACTTGACTGGTGCAAGAATGTTGAGATTCTTTGGAATCCCTTCTCGAACGGAAGCTTTTGAGAGGCGAAGAAGGAGACCTGAAATAAAAAGAGGAGGTGATGACGATGCTTACCCGGGCCGCCACATCCGAGTTTCTCTCTCTGCGTGTGACTCTGACTCTGTGCCTGCGAATTACCGAGTCCAGGGTCCTTCGGGCAGAGTAAGAACTCCAATAATTGGAACTTGGGATTCTCAATCAATGGCGACCTCAACGCCCAAGGATGGCTCTGGCAAGAAGGTGAGAAAGCCCTATACAATTACCAAGTCCAGGGAGAGCTGGACTGAGGAAGAACACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTCATTCAGATTCGAAGCCATGCCCAGAAATACTTTTTGAAAGTTCAAAAGAATGGGACAGTCGCACACGTGCCTCCTCCTCGCCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCATTGCCTGCATCCATGGCTTATGCTTCTTCAATTAATACCCTTGTCCCTCGGTATGCCTCATGGGATGAAACTTCCCTGCTGATGAACACTGGATCAAACAAATCTGTGCCCTGCCTAGATGAACTCAACAATTTTTATGAAAATGAAGCTGATATTGGATCAAAGGGGATAGCAAGGATTAGCAATAGCAGTCTTAGTGGTGTTGGAAACCCTACAGGAACGCTACCAAGTTCTGATATGCCAAAGCAAGGAAAACAAGCTCCAATGCTTCATGGTTTACCAGATTTTGCTGAAGTTTACAGCTTTATTGGAAGTGTTTTTGATCCAGATACAAAGGGCCATGTACATAAGCTAAAGGAAATGGATCCTATAAATTTTGAAACCGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCAGACTGTGAGCCAATTAGGAAAATTATGTCATCATACGACATCAATACCAAGAAAGTCGGAGTTACTGCAGGTGTTGATTTTGCTGATTGCTGGGTCAAATTTCGATGGAACAGTGCCGTTTGCTTAGCAAGCAACAAGGCATAG 1341 0.428 MFPLSITLRHKSRHCSQLFKKSEHACENLVLTPTLSNNGCEKLTTNLRMNQQKNDLQFYVKPFSKQVTTENHLTGARMLRFFGIPSRTEAFERRRRRPEIKRGGDDDAYPGRHIRVSLSACDSDSVPANYRVQGPSGRVRTPIIGTWDSQSMATSTPKDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASMAYASSINTLVPRYASWDETSLLMNTGSNKSVPCLDELNNFYENEADIGSKGIARISNSSLSGVGNPTGTLPSSDMPKQGKQAPMLHGLPDFAEVYSFIGSVFDPDTKGHVHKLKEMDPINFETVLLLMRNLTVNLSSPDCEPIRKIMSSYDINTKKVGVTAGVDFADCWVKFRWNSAVCLASNKA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2854 446 SMART sant 174 222 IPR001005 -
Glsi02g2854 446 FunFam protein REVEILLE 6 isoform X1 177 225 - -
Glsi02g2854 446 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Glsi02g2854 446 Gene3D - 178 225 - -
Glsi02g2854 446 PANTHER SWI/SNF COMPLEX-RELATED 149 397 - -
Glsi02g2854 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 224 IPR017930 -
Glsi02g2854 446 SUPERFAMILY Homeodomain-like 169 225 IPR009057 -
Glsi02g2854 446 ProSiteProfiles SANT domain profile. 173 226 IPR017884 -
Glsi02g2854 446 CDD SANT 177 220 IPR001005 -
Glsi02g2854 446 Pfam Myb-like DNA-binding domain 175 220 IPR001005 -
Glsi02g2854 446 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 222 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2854 Glsi-ChrGlsi02 77566063 77572395 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi02g2854 Myb_DNA-binding 7.7e-12 CL0123