Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2849 ATGGAAGCGAGGGTGGGGGGACCCCATCCCAAAGCACCGAAATGTCTCATCACACTCGATTCCTCCCTCTTCTCTCTCTCTGATCTTTCCCTCTCCTCTTCGAAACTCCCTTCTCTCTCGCCCACCACAACTTCAATGGTCACAATGTTGGATCTTAATCTCAACGTCGGTTCCTCTGATTCTGCATCGAATTCCGTCGACATGCCTACCGAGAATATTCTACCACTTTCTGCTAGCCAAATGGATAGCTCGGGAAGCCTTAATTCTTCCGTCGTCAATGCCGATACCTCCCCCAACACTTGTGACGAAGATTCTTGCTCTTATGGCGATGCCTTTGCTCACAACTTTGGAATACTGAATAAGAACACCATAAGTGATGGCACAAGCTCCAAAGCAGTTGAACTTCCTGTAGCCGAAGTTGGAGATGGCTGTTATCGGACCATCCAGCTTTTCCCGATCGCCGGAGCCGAAGAGGCTGATGCCACTGAATTGGGAATCGAGCAGCGGTTTACCGGTTCGTCTTCAAGTAGGGGGTGGTTGGATTTCTTGTGCAAGGAGGTAGGTGACGGTGGAAAGCCGGAGCAGACGATAATACCCCAGCAGCAGCAGAGACCACAGGTCAAGAAGAGCCGGCGGGGACCGAGGTCGCGAAGCTCTCAGTATCGCGGCGTTACATTTTATCGAAGAACTGGAAGATGGGAATCACATATTTGGGATTGTGGGAAACAAGTGTACTTGGGAGGATTTGATACAGCGCATGCTGCAGCAAGGGCATATGATCGAGCTGCAATCAAGTTCCGTGGTGTTGATGCAGATATCAATTTCAACGTCAGTGATTATGAAGAAGATATAAAGCAGATGTGTAACTTCACAAAGGAAGAATTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTTGCAAGGGGAAGCTCAAAATATAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTTGGGAAAAAGTATATATATCTTGGGCTATTCGATAGCGAAATAGAGGCTGCAAGGTCTTATGAAACCAGGGCATATGATAAAGCGGCTCTTAAATGCAATGGAAGGGAAGCTGTCACAAACTTTGAGCCTAGCTCATATGAAGAGGAGATATTTTCTAAGGCAGCTAATGAAGATAGCAATAACAATCTTGATCTTAGCTTGGCCATAGCTCCCCCTGGTTCCTCAGATGGTTTCCAAGTTCAGCATGGCTGGGTCAACGTGCCTGTTGACGGGAGATTTACGTTTGAGCACTCTGCATCAAGATCACTGGAGGCTCAGCCCCCTCATGTTTTCTCAATAGCTTCCGAGCATCCTTCTGTCTGGAGCGGTACCAATTTCTTTGCCGTCAGTAAGGAAAGAGCAATGGAGAACAGAATGGAAGCTGATTCCCTGCCTAACTGGGCATTTCAATTCCAAGGTCCTTATGGTGGGGCAACGTCGATTCCATCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCAACGAGATCGCCACCGGCCGCTGACAGTCAAATTCATTTTCCAAACATGACCATCCACCCTCATTTTTCTTCATCAATCACTAACTCCAGCATCATTTCCCCTTTCTGA 1629 0.4788 MEARVGGPHPKAPKCLITLDSSLFSLSDLSLSSSKLPSLSPTTTSMVTMLDLNLNVGSSDSASNSVDMPTENILPLSASQMDSSGSLNSSVVNADTSPNTCDEDSCSYGDAFAHNFGILNKNTISDGTSSKAVELPVAEVGDGCYRTIQLFPIAGAEEADATELGIEQRFTGSSSSRGWLDFLCKEVGDGGKPEQTIIPQQQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYEEDIKQMCNFTKEEFVHILRRQSTGFARGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARSYETRAYDKAALKCNGREAVTNFEPSSYEEEIFSKAANEDSNNNLDLSLAIAPPGSSDGFQVQHGWVNVPVDGRFTFEHSASRSLEAQPPHVFSIASEHPSVWSGTNFFAVSKERAMENRMEADSLPNWAFQFQGPYGGATSIPSFSAAASSGFPSSTRSPPAADSQIHFPNMTIHPHFSSSITNSSIISPF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2849 542 Gene3D AP2/ERF domain 311 375 IPR036955 GO:0003700|GO:0006355
Glsi02g2849 542 Gene3D AP2/ERF domain 219 278 IPR036955 GO:0003700|GO:0006355
Glsi02g2849 542 CDD AP2 311 376 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 ProSiteProfiles AP2/ERF domain profile. 220 276 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 MobiDBLite consensus disorder prediction 190 221 - -
Glsi02g2849 542 CDD AP2 220 278 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 SUPERFAMILY DNA-binding domain 311 375 IPR016177 GO:0003677
Glsi02g2849 542 SMART rav1_2 312 380 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 SMART rav1_2 220 282 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 SUPERFAMILY DNA-binding domain 219 278 IPR016177 GO:0003677
Glsi02g2849 542 FunFam AP2-like ethylene-responsive transcription factor 219 278 - -
Glsi02g2849 542 PRINTS Ethylene responsive element binding protein signature 313 324 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 PRINTS Ethylene responsive element binding protein signature 356 376 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 Pfam AP2 domain 220 268 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 Pfam AP2 domain 311 353 IPR001471 GO:0003700|GO:0006355
Glsi02g2849 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 186 392 - -
Glsi02g2849 542 ProSiteProfiles AP2/ERF domain profile. 312 374 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2849 Glsi-ChrGlsi02 77548790 77552281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2849 207 400 AP2-EREBP Transcription Factor Family AT4G36920 79.188 1.99e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi02g2849 AP2 2e-06 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2849 02 77548790 77552281 Glsi02g2849 02 77548790 77552281 ECH