Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2844 ATGTCTGAAGCTCCGGGCAGTCCAGGCGGTGGTAGCCACGAGAGCGGTGACCAGAGCCCTCGCTCTAATGTCCGAGAGCAGGACAGGTACCTGCCCATCGCCAATATCAGCCGGATCATGAAGAAGGGGCTTCCTGCTAACGGAAAAATAGCTAAGGATGCTAAGGAGACCGTACAGGAATGCGTTTCCGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGCGATGATTTACTTTGGGCAATGGCGACTCTAGGGTTTGAGGATTATATCGATCCCCTGAAGATTTATCTGTCTAGATACAGAGAGGGTGATACCAAGGGTTCCGCTACCAAGGGGGGAGATGCATCTGCTAAGAAAGATGTTCAACCCAATCCTAACGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGTGCTAATTATACAAATTCTCAGCCTCACGTTCAGCGTATGATGGTTCCTATGCAAGGCCCAGAATAG 519 0.4971 MSEAPGSPGGGSHESGDQSPRSNVREQDRYLPIANISRIMKKGLPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDTKGSATKGGDASAKKDVQPNPNAQLAHQGSFSQGANYTNSQPHVQRMMVPMQGPE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2844 172 Gene3D Histone, subunit A 17 159 IPR009072 GO:0046982
Glsi02g2844 172 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi02g2844 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi02g2844 172 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Glsi02g2844 172 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Glsi02g2844 172 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Glsi02g2844 172 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Glsi02g2844 172 MobiDBLite consensus disorder prediction 117 172 - -
Glsi02g2844 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Glsi02g2844 172 MobiDBLite consensus disorder prediction 1 29 - -
Glsi02g2844 172 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
Glsi02g2844 172 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2844 Glsi-ChrGlsi02 77511226 77514051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2844 7 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.907 1.20e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi02g2844 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2844 02 77511226 77514051 Glsi02g2844 02 77511226 77514051 ECH