Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2821 ATGTTAATGCATTTGTTTCTGGCTTCAATATCAATTATGCGAAGCCTTGAAATTATTATGTATGCTGCTAAGTTTACTGTTTTGTTAGCCAGTACTAAGGACGATTCGTCCCGATTAATTTTATCAAAGTCGTCCATCAATTCTCTGTTCGATATGCAGATCTTCGTCAAAACCCTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCGGACACCATAGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAACTCGAGGACGGTCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGAGGGGAGGCATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAAAGCTCCGACACTATTGATAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGAAGGACCCTTGCCGATTATAACATCCAGAAAGAGTCCACCCTTCATTTGGTGCTTCGACTTCGTGGGGGTATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACTATTACTTTAGAAGTGGAGAGTTCGGACACAATAGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGTATCCCGCCGGACCAACAGCGTCTCATCTTCGCCGGGAAACAGCTTGAGGATGGACGTACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTTCACCTTGTTCTCAGACTACGTGGTGGGGATATCTAA 846 0.4835 MLMHLFLASISIMRSLEIIMYAAKFTVLLASTKDDSSRLILSKSSINSLFDMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2821 281 SUPERFAMILY Ubiquitin-like 51 127 IPR029071 -
Glsi02g2821 281 CDD Ubl_ubiquitin 128 203 - -
Glsi02g2821 281 CDD Ubl_ubiquitin 204 279 - -
Glsi02g2821 281 FunFam Polyubiquitin 3 128 203 - -
Glsi02g2821 281 ProSiteProfiles Ubiquitin domain profile. 128 203 IPR000626 GO:0005515
Glsi02g2821 281 ProSitePatterns Ubiquitin domain signature. 78 103 IPR019954 -
Glsi02g2821 281 ProSiteProfiles Ubiquitin domain profile. 52 127 IPR000626 GO:0005515
Glsi02g2821 281 CDD Ubl_ubiquitin 52 127 - -
Glsi02g2821 281 SUPERFAMILY Ubiquitin-like 203 279 IPR029071 -
Glsi02g2821 281 ProSiteProfiles Ubiquitin domain profile. 204 279 IPR000626 GO:0005515
Glsi02g2821 281 FunFam Polyubiquitin 3 204 279 - -
Glsi02g2821 281 Pfam Ubiquitin family 130 201 IPR000626 GO:0005515
Glsi02g2821 281 Pfam Ubiquitin family 206 277 IPR000626 GO:0005515
Glsi02g2821 281 Pfam Ubiquitin family 54 125 IPR000626 GO:0005515
Glsi02g2821 281 ProSitePatterns Ubiquitin domain signature. 154 179 IPR019954 -
Glsi02g2821 281 ProSitePatterns Ubiquitin domain signature. 230 255 IPR019954 -
Glsi02g2821 281 Gene3D - 204 281 - -
Glsi02g2821 281 Gene3D - 128 203 - -
Glsi02g2821 281 Gene3D - 47 127 - -
Glsi02g2821 281 PRINTS Ubiquitin signature 83 103 IPR019956 -
Glsi02g2821 281 PRINTS Ubiquitin signature 104 125 IPR019956 -
Glsi02g2821 281 PRINTS Ubiquitin signature 62 82 IPR019956 -
Glsi02g2821 281 PANTHER UBIQUITIN 128 205 - -
Glsi02g2821 281 SMART ubq_7 128 199 IPR000626 GO:0005515
Glsi02g2821 281 SMART ubq_7 204 275 IPR000626 GO:0005515
Glsi02g2821 281 SMART ubq_7 52 123 IPR000626 GO:0005515
Glsi02g2821 281 FunFam Polyubiquitin 3 52 127 - -
Glsi02g2821 281 SUPERFAMILY Ubiquitin-like 127 203 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2821 Glsi-ChrGlsi02 77393762 77395253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2821 204 281 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.718 3.28e-49 157