Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2820 ATGGGACATAGACATTTATATAGCATATCTCAGATGTTTGAGAGTGAGCATGATCAGAATTGGAATCATATGCATGCTGATCACAATTATGTGCAACTAGGTAGGACTAGCACTTCAGAGAATGGTGCTTTTATTTATCCTGTTGAAAATATGTCTATAGATGGCAGTTCTCTCGCTGCTCCTAGGAACTCTGCCCCAAGGTCAAATGGATATGTATCCTCAAGTCTCAACATTGAAGTACCCCATCATCAATCGGATGCATCAGGATCCTCTCATGATCATTTTTTGCATTCAGCAAATCCTGGAGCCTTCTTTGCGGTTCCTGAAAACTATGCTCACCAGCCTTCTTCTTCCAATTATGAGAGACAGGCATTTCAAGTCACTGATGGTGGGTTTATTGATCTTACAATGGGAAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAATCTGTGAGAGAGGCAGTACAAGCAGATACTTTAATGCAGGAAGTTCTACTGATCTTCCTATACCTTCAGAAGTACGACAGGAGAAGCCAAGCATGGATTCTCAATATATGCCTTGGGATCATGTTAATATGACACCCACCTTCAGAGGCAGTGGCCTTTCAATTAGGGGTGAGGGTTCTTTAAGGAACGTGAGAAGCCGTTCTGCACTTGATTTGGAATCGAACCTTTCTAGGACCCATTTATCCAGCAATCATTTACACAATTACTCTACGGGCCCACCCGTCGACCATTCTAGCCCAGTGAATCTTTCTGATCAGACTTCCAGTACTATGAGTAGGGATTGGAGCCAAATGAGCATATCTCCCGCTCATGGGAGGGTGCTATTATCTGATACAAGTGGATACAGTCATGAGACAAGTCACTTGCTTGTTGGAAATGGTACTAGTAATGCTTCAGTAGATGTTGGGGGTTACCATCATGAATATGGTACAAGCATAAATCCTACTGTTGCTCAAACTTTTCATGGTAACCTCACTCAGACAGCTAGGGGAGTTCGAAGTAACTATTCTCAAAGATCTACTCCAACTCTAACTTTTAGGGCCTCTTCAAGCTTGCGATTGGGACACATGGTGCCGTCAGATGATCGATTGCACGTGATGGCTGAAGGTTACCCCTCTAGACATCCAAGACCATTGACCACCACCAGCTGGCGGAATAGTGACAGAAATGGGAGGTCAAGGATATCTAGCAATAGATATCGATCATTGCCTGATGAGGCTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGATTGTTGATCGTGCATCTCTGTATGGTTCTAGAAATATGTTTGATCATCATAGAGACATGAGGATGGACATAGACAATATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCATGTCAGCACAGGATTGTCTGAGAATTTGGTTTCAAAGTGTTTGACAGAATTAATATATTGTTCATCTGAGCAAAGTCAGGAGGAAGGAACTTGTGTAATCTGTCTGGAAGAGTACAAGGACATGGATGATGTTGGGACATTGAGAACTTGTGGCCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACATTTGTCCTATCTGCAAGGCTTCTGCTTTGCCTGATAATGTGAAGGATAAATAA 1653 0.4313 MGHRHLYSISQMFESEHDQNWNHMHADHNYVQLGRTSTSENGAFIYPVENMSIDGSSLAAPRNSAPRSNGYVSSSLNIEVPHHQSDASGSSHDHFLHSANPGAFFAVPENYAHQPSSSNYERQAFQVTDGGFIDLTMGSGRGPHKRKSPGIPSICERGSTSRYFNAGSSTDLPIPSEVRQEKPSMDSQYMPWDHVNMTPTFRGSGLSIRGEGSLRNVRSRSALDLESNLSRTHLSSNHLHNYSTGPPVDHSSPVNLSDQTSSTMSRDWSQMSISPAHGRVLLSDTSGYSHETSHLLVGNGTSNASVDVGGYHHEYGTSINPTVAQTFHGNLTQTARGVRSNYSQRSTPTLTFRASSSLRLGHMVPSDDRLHVMAEGYPSRHPRPLTTTSWRNSDRNGRSRISSNRYRSLPDEAGLHDRFSSEGFMIVDRASLYGSRNMFDHHRDMRMDIDNMSYEELLALGERIGHVSTGLSENLVSKCLTELIYCSSEQSQEEGTCVICLEEYKDMDDVGTLRTCGHDYHVSCIRKWLSMKNICPICKASALPDNVKDK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2820 550 MobiDBLite consensus disorder prediction 376 405 - -
Glsi02g2820 550 MobiDBLite consensus disorder prediction 237 264 - -
Glsi02g2820 550 MobiDBLite consensus disorder prediction 382 405 - -
Glsi02g2820 550 CDD RING-H2_RNF24-like 495 542 - -
Glsi02g2820 550 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 543 IPR045191 GO:0061630
Glsi02g2820 550 Pfam Ring finger domain 496 539 IPR001841 -
Glsi02g2820 550 SUPERFAMILY RING/U-box 487 543 - -
Glsi02g2820 550 SMART ring_2 497 538 IPR001841 -
Glsi02g2820 550 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Glsi02g2820 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 543 IPR013083 -
Glsi02g2820 550 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 462 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2820 Glsi-ChrGlsi02 77391077 77393643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2820 1 549 C3H Transcription Factor Family AT2G37150 45.374 1.99e-130 390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2820 02 77391077 77393643 Glsi02g2820 02 77391077 77393643 ECH