Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2817 ATGATATCTGGTGACCCTTTTTCCTTATCTACTTCGATCGGAGGGTTTGCACTTGCTCCACAACAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCTGTGGCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATCGGTCTTTCGCCCAAGTCTCTCATGGCTACGAACCGATTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGAGATCAAAACCTTCAGCTACACCGGAGGGGCCACAACCTTCCGTGGAAGCTACGACAAAGGTCGAACAAGGAGGTCGTTCGAAAGAAGGTTTACATCTGCCCAGAGAAGACTTGCGTACACCATGACCCGGCCAGAGCACTGGGCGACCTCACCGGAATAAAGAAGCATTATAGCAGAAAACATGGCGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAATCCGATTGGAAAGCTCACACTAAAACTTGTGGCACTAGAGAATACAAGTGCGACTGTGGTACCCTCTTCTCAAGGAAGGACAGTTTCATTACCCACAGAGCTTTCTGCGATGCCTTAACCGAAGAGAGTGCGAGAATCACCTCAGTTGGCACTACAAATTTAAATTTTAAGAACGAAGAGACTGTGATAAACTCTCAGGCTAGTTCGGTGCATGGATTTGCTGGCCAGGGACTTCAAAACGTCCCAGGAATTTCGCAATTTGGTCCGCATGGATTTCGTTCAGATTTTAATGGAATGTGCGTAGGAGGCAACTCACTTGGGGCTGACCAGCAAAGGCCAAGCTTGTCACTGTGGTTGAACCAGCTGGGAAATCCCCAGATTAATCCTCTCGATGTTGGAGCGAGTTCTGGTCATTATGTATCATCAAGTTCTTCAGGTTTGCCTGAAATTGTGCAAATGGCTCAAGCTAATGCCTTTGGCTCTTCTTCTTTGTCTAATTTTGGAATACCATCTTCCAATTCAGCTAACGCAAACCTTTCCCTATCGTCACCTCCTATTGGGAAAAATGGAGAAAGTGAAACTGGAAACTTAGTATCTATGTATTCTGAGGGTCAATCGAAGCCAGTTTCTGCCATGTCAGCAACTGCACTTCTGCAGAAGGCAGCTCAGATGGGTTCTACCAGAAGCAGCAACCCCTCAATCTTCAGCGGAAGCTTTGGAGTAATGAGCTCCTCTTCTTCGCAGACTACAAGTCTCGAAAATAACGCTGACCAAAACCGTCACGAGCTTGGCCAAGTCTTTCAGAGTATGAAGCAAAAGCAAGCAGAGAATTTTTCTTCAACTAGTAGTGCCGCTATGCTGGGGAACACTAACTTTAGCTCATTGACGCATTCATCAAACAGTCTTGACCAACTTGTGTTGCAATCCAATGGAAAACAAAATAAACAAGTGCAATTGAAGCTCCATCCTGATTCAAACTCTGGGGATCATGGCTACACTAGAGATTTTCTAGGCATGGGTGGAGGAGGAGCTGACCCTCCATTCCTACCCCACGACCTGGCAAAGTTTGCTTCCATAGGCTCACCGATGGGTTTGCCCCAATTCACTGGCAGTCAGTGA 1584 0.4653 MISGDPFSLSTSIGGFALAPQQNTNPNPKPNPPPVAKKKRNLPGTPDPDAEVIGLSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYICPEKTCVHHDPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARITSVGTTNLNFKNEETVINSQASSVHGFAGQGLQNVPGISQFGPHGFRSDFNGMCVGGNSLGADQQRPSLSLWLNQLGNPQINPLDVGASSGHYVSSSSSGLPEIVQMAQANAFGSSSLSNFGIPSSNSANANLSLSSPPIGKNGESETGNLVSMYSEGQSKPVSAMSATALLQKAAQMGSTRSSNPSIFSGSFGVMSSSSSQTTSLENNADQNRHELGQVFQSMKQKQAENFSSTSSAAMLGNTNFSSLTHSSNSLDQLVLQSNGKQNKQVQLKLHPDSNSGDHGYTRDFLGMGGGGADPPFLPHDLAKFASIGSPMGLPQFTGSQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2817 527 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Glsi02g2817 527 SMART c2h2final6 108 138 IPR013087 -
Glsi02g2817 527 SMART c2h2final6 66 88 IPR013087 -
Glsi02g2817 527 SMART c2h2final6 143 163 IPR013087 -
Glsi02g2817 527 MobiDBLite consensus disorder prediction 25 39 - -
Glsi02g2817 527 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Glsi02g2817 527 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Glsi02g2817 527 MobiDBLite consensus disorder prediction 1 24 - -
Glsi02g2817 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Glsi02g2817 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 499 IPR031140 -
Glsi02g2817 527 MobiDBLite consensus disorder prediction 1 50 - -
Glsi02g2817 527 FunFam protein indeterminate-domain 12-like 45 114 - -
Glsi02g2817 527 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Glsi02g2817 527 Gene3D Classic Zinc Finger 122 200 - -
Glsi02g2817 527 Gene3D Classic Zinc Finger 49 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2817 Glsi-ChrGlsi02 77368073 77369892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2817 1 258 IDZ Gene Family AT5G03150 66.667 5.09e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2817 zf-C2H2_jaz 7.8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2817 02 77368073 77369892 Glsi11g0536 11 3489712 3490221 CCT
Glsi02g2817 02 77368073 77369892 Glsi02g2817 02 77368073 77369892 ECH