Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2812 ATGGGTAACATAGGAAGTAGCGGCGTTAACACCCATCGGAGAAACAGTAGCAGGCGGACTCATCCGCCTCCGCCACCGCCGGTTACTCCGCAGCCTGAAATCGCAGCCAATCGGTTTGTGTATCCTACACCCTACCCATCACAATACCCAAACCCGAATCCCTCCCCGTATTTTCAGTACCCAGGTTACTACCCCCCGGCGCCTTTGCCGGCTCCAATCGATCACCACCATCGTATGGGTTCTCATCCACACATGGACCCAGCATGGATGGGTGGAAGTTACCACTGTGGGCTAGTCATGCCTCCGCCTGCACCGTATGTAGAGCATCAGAAGGCGGTTACCATAAGGAATGATGTTAACATCAAGAAGGAGTCTCTAAGGATTGAGCCGGATGAGGAAAATCCTGGGCGGTTCCTTTTAGCTTTCACATTTGATGCCACAGTTGCTGGGAGTATCACCATACTTTTTTTTGCTAAAGAAGATGACGGCTGCACCCTTACACCAATGAAGGAAAATATTGTTACACCTGGGATTGTTCATTTCCAGGAAGGTCTTGGCCAGACGTTTAGACAGCCAATTGGCACTGGTATTGACTTTTCAATATTTGACGAGTCAGAATTATTGAAAGTGGGTGAAACAGATGTCTACCCTCTGACGGTGAAGGCAGATACATCCTCTGGTAAACAGGATGAATCAAATGAAACTTTAACATCTGGTAGCAGAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGGATTCCGGGTGAAGGTAGTTAAGCAGATTTTGTGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAGATTCAGTGGAGAGTGAGTTAGATGGGAATGACCCTGGAAAGGAGTGTGTCATCTGCCTGTCAGAGCCACGGGACACAACTGTCCTTCCTTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACACATAGATGCCCGATTTGCAGACAACCAGTTGAGAAGCTTTTGGAGATAAAGGTGAATGACGGGACTGAGGAATAA 1065 0.4761 MGNIGSSGVNTHRRNSSRRTHPPPPPPVTPQPEIAANRFVYPTPYPSQYPNPNPSPYFQYPGYYPPAPLPAPIDHHHRMGSHPHMDPAWMGGSYHCGLVMPPPAPYVEHQKAVTIRNDVNIKKESLRIEPDEENPGRFLLAFTFDATVAGSITILFFAKEDDGCTLTPMKENIVTPGIVHFQEGLGQTFRQPIGTGIDFSIFDESELLKVGETDVYPLTVKADTSSGKQDESNETLTSGSRNSQITQAVFEKEKGGFRVKVVKQILWVNEMRYELQEIYGIGDSVESELDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTHRCPICRQPVEKLLEIKVNDGTEE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2812 354 PANTHER MAHOGUNIN 1 348 IPR045194 GO:0061630
Glsi02g2812 354 MobiDBLite consensus disorder prediction 1 33 - -
Glsi02g2812 354 ProSiteProfiles Zinc finger RING-type profile. 298 337 IPR001841 -
Glsi02g2812 354 SMART ring_2 298 336 IPR001841 -
Glsi02g2812 354 FunFam probable E3 ubiquitin-protein ligase LOG2 282 347 - -
Glsi02g2812 354 Pfam Zinc finger, C3HC4 type (RING finger) 296 342 - -
Glsi02g2812 354 SUPERFAMILY RING/U-box 297 343 - -
Glsi02g2812 354 CDD mRING-HC-C3HC5_MGRN1-like 296 337 IPR045195 -
Glsi02g2812 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 347 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2812 Glsi-ChrGlsi02 77345176 77348187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2812 87 317 C3H Transcription Factor Family AT3G09770 62.025 4.48e-98 292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2812 02 77345176 77348187 Glsi02g2812 02 77345176 77348187 ECH