Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2807 ATGATCCTCACGTTACACGATGGGTGGATATTCACCAACCAAATCTACGCTATGGTGCTCAATCCATCTGAGCTGGATTGGATTGGGGCAGAAGCGTCTATTGTTATTCTTTTGCTCCCCGCTCTCACCTCCGTTCCTATCTCCATGGCTAAAGACCTCGAGGGACCTCCTCCGCAAAGTGGATTGCATCACAAGGACTACCACGACCCACCACCCGCTCCTCTCTTCGACTTTGCAGAGTTCGGCAAGTGGTCCTTTTACAGGGCTCTCATTGCCGAGTTCGTCGCTACTCTCTTGTTCTTGTACATCACTGTTCTGACCGTCATTGGTTACAAAAGCAGTATCGATCCCGCTCGTGGCGGCAACCTCTGTGATAGCGTTGGCATTCTCGGCATCGCTTGGGCTTTTGGGGGCATGATCTTCGTCCTCGTCTACTGTACCGCCGGCATTTCTGGAGGGCACATAAACCCGGCAGTGACATTTGGGCTGTTCCTGGCGAGGAAGGTGTCGCTGATTAGAGCGATTCTGTACATGGTGGCTCAGTGCTTGGGTGCCGTATGTGGGTGTGGGTTAGTGAAGTCTTTCCAAAAAGCCTACTACAACCGTTACGGCGGTGGTGCCAACGAACTTTCTTCCGGGTACAGCAAAGGCACTGGTTTGGGAGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAATGCCAGGGATTCTCATGTCCCCGTGTTGGCTCCACTTCCAATTGGATTTGCAGTGTTCATGGTTCACCTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCCGCTAGAAGCCTTGGGGCTGCAGTGATCTACAACCAGGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTCGGACCCTTCATTGGTGCTGCCATTGCTGCAATATACCACCAGTATGTGTTGAGGGCTCAGGCGGCCAAAGCTCTAGGGTCTTTCAGGAGCTCCTCAAATTTGTAA 1011 0.5242 MILTLHDGWIFTNQIYAMVLNPSELDWIGAEASIVILLLPALTSVPISMAKDLEGPPPQSGLHHKDYHDPPPAPLFDFAEFGKWSFYRALIAEFVATLLFLYITVLTVIGYKSSIDPARGGNLCDSVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAVCGCGLVKSFQKAYYNRYGGGANELSSGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 173 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 136 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 222 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 258 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PRINTS Major intrinsic protein family signature 298 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 SUPERFAMILY Aquaporin-like 81 320 IPR023271 -
Glsi02g2807 336 Pfam Major intrinsic protein 82 315 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 NCBIfam MIP family channel protein 92 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi02g2807 336 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 63 330 IPR034294 -
Glsi02g2807 336 FunFam Probable aquaporin PIP1-2 73 334 - -
Glsi02g2807 336 ProSitePatterns MIP family signature. 154 162 IPR022357 -
Glsi02g2807 336 Gene3D Glycerol uptake facilitator protein. 73 336 IPR023271 -
Glsi02g2807 336 CDD MIP 88 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2807 Glsi-ChrGlsi02 77317437 77319883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2807 39 336 Major Intrinsic Protein MIP AT2G37170 78.523 1.76e-172 480