Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2799 ATGATTACGTTTATGGATTCGAAGGAGAAATTGAAGGAGGTGGAAAAGTGTTTGGATCCTCAGCTATGGCATGCTTGTGCCGGCGGGATGGTGCAAATGCCACCGGTAAACTCTAAGGTTTTCTACTTCCCTCAGGGTCACGCAGAGCATGCATTTGGACCTGTGGACTTCAGAACTTACCCCAGGGTTCCGCCTCACATTCTATGCAGAGTCGTAGCTATCAAATACATGGCTGATCCTGAGACTGACGAGGTCTATGCCAAACTTAGGCTTCTTCCTCTGAACGGAAGTGAGTCTGATTCTGACAATGACCGTATTGGGGGCATCAACGGCTCTGAAACTCAAGGTAAACCCGCTTCATTTGCAAAAACCTTGACACAGTCGGATGCCAACAATGGTGGTGGGTTTTCTGTTCCTAGATATTGTGCAGAGACAATTTTTCCTCGTTTAGACTATTCTGCGGATCCTCCTGTTCAAACCATCCTTGCTAAAGATGTTCATGGGGAAATATGGAAATTCAGGCACATTTACAGAGGCACGCCTAGGCGGCATCTTTTGACCACTGGGTGGAGTACATTTGTGAATCACAAGAAGCTTGTGGCTGGGGATTCGATTGTGTTTTTAAGAGCAGAAAATGGAGATCTCTGTGTTGGAATTCGCCGAGCAAAAAGGGGAATTGGTGGTGGACCAGACTCTTCATCAGGGTGGAATCCGGCAGGTGGGAATTGTCCCGTACCTTATGGAGGATTTTCTGCCTTCTTGAGGGAGGACGATAACAAATTGTTAAGAAATGGCAACAGCAATGCGTTGAGCTCAAGTGGGAGTTTGATGGGCAGGGGGAAAGTGAGGGCCGAATCAGTTGTTGAAGCTGCAACTCTTGCTGCCAAAGGCCAGCCATTTGAGGTTGTTTATTACCCGCGGGCAAGTACTCCGGAGTTCTGCGTGAAGGCCTCGTTGGTTAAAGCAGCACTGCAGATTAGGTGGTGTTCAGGAATGAGGTTCAAGATGGCCTTTGAAACTGAGGATTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCAGTTCAAGTTGCCGATCCACTTCGCTGGCCTGATTCACCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAACGTGAAAAGGGTGAGCCCGTGGCTGGTTGAATTGGTATCAAACATGCCCGCCGTCCATGCCTCCCCTTTCCAACCAGCACTGAAGAAAATGAGATTGCCTCAACACCCAGATTTTCTCTTCGATGGTCAAATTCCTGTGCCAACATTTCCCCCCAACCTTCTAGGACCCAGCAACCCCTTTGGTTGTCTACCCCAAAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAACAAATTTCAGTCAGGTCTATTTCCGGCTGGTTTCCAGCCACTTGATCATGCTGCTTCACCTATGAGGGTCTCCAATAATAACCCAACAGCGAAAAAACCTAGCACGAGTGACAATGTCTCTTGCTTACTATCTATTGCAAATTCTTCCCCGTCTTCAAAGAAACTGGGTGATATGAAGACACCCCAGCTCGTGCTTTTTGGCCAAACGATCCTTAGTGAGCAGCAGATCTCTCTGAGCTGCTCTGGTGATACAATCTCCCCAGTTCTTACTGATAATAGTTCATCAGATGGAAATCCTGATAAATTGACCAAGTTTTCTGATGGTTTAGGATCTGCTCTTCATCAGCCAGGTCTACGAGAGCACTCAGAAATTGAGGCCAAGTTAGAGACTGGCCATTGTAAAATTTTTATGGAATCAGAAGATATAGGTCGCACTATGGACCTCTCGTTGCTTGGGTCTTATGATGAATTATATAGGAAGCTGGAAGACATGTTTGGCGTAGAAAAATCTGAGATGCCGAGCCGTGTGCTTTACCGTGATGTAACAGGGGCAGTCAAACACGTTGGAGATGAACCATTCGGTCACTTTACAAAAACAGCCAGGAGGTTGACGATTCTAATGGATTCCAGCAGCGACAATGTAGGAGTGTAG 2070 0.4696 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAFGPVDFRTYPRVPPHILCRVVAIKYMADPETDEVYAKLRLLPLNGSESDSDNDRIGGINGSETQGKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPDSSSGWNPAGGNCPVPYGGFSAFLREDDNKLLRNGNSNALSSSGSLMGRGKVRAESVVEAATLAAKGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPLRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAVHASPFQPALKKMRLPQHPDFLFDGQIPVPTFPPNLLGPSNPFGCLPQSSPAGMQGARHAHYGLSLSDLHLNKFQSGLFPAGFQPLDHAASPMRVSNNNPTAKKPSTSDNVSCLLSIANSSPSSKKLGDMKTPQLVLFGQTILSEQQISLSCSGDTISPVLTDNSSSDGNPDKLTKFSDGLGSALHQPGLREHSEIEAKLETGHCKIFMESEDIGRTMDLSLLGSYDELYRKLEDMFGVEKSEMPSRVLYRDVTGAVKHVGDEPFGHFTKTARRLTILMDSSSDNVGV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2799 689 FunFam Auxin response factor 328 401 - -
Glsi02g2799 689 CDD B3_DNA 120 221 IPR003340 GO:0003677
Glsi02g2799 689 Gene3D - 119 223 IPR015300 -
Glsi02g2799 689 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Glsi02g2799 689 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Glsi02g2799 689 FunFam Auxin response factor 119 223 - -
Glsi02g2799 689 Gene3D - 599 687 - -
Glsi02g2799 689 ProSiteProfiles PB1 domain profile. 603 686 IPR000270 GO:0005515
Glsi02g2799 689 SUPERFAMILY DNA-binding pseudobarrel domain 115 224 IPR015300 -
Glsi02g2799 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi02g2799 689 Gene3D - 327 401 - -
Glsi02g2799 689 SMART B3_2 121 223 IPR003340 GO:0003677
Glsi02g2799 689 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2799 Glsi-ChrGlsi02 77273568 77275979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2799 14 689 B3 DNA Binding Superfamily AT4G30080 59.942 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi02g2799 B3 7.3e-21 CL0405