Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2794 ATGCCATGAATGATAACTGATGCTCTATATGTCAAGTATAGAGTGGAAAGACTTGGTTTTGGCAGGTATCTGGTTGAGGGTGCATGGGATGATGAGGTGAAATTCACAGGTTCTAGTAGAGCTCTATGGCTTCTGGTAGATCAAGATCAGTTTCAGGATTATCTTGAAACAGAGATATTAACTGCAAGCATAGAAAGTCCCTTGTCCATGCCGGCCTATAAGATGAATGGCAAGCATACGCTTGAGCTTGAGAAGGATGGAACGACCATGTCCTTGCAAGGAAAAGAACTTTCCAGGGTCTTTTCTGAGGATTATGATGCAACGAAAAAGTTGATATTGGATCCTAGGGGACCCAGAGTAAACAGATGGAACAAAATTTTCTTAGTATCGTGTTTGATTTCACTATTTGTGGATCCCCTGTTCTTTTACTTGCCAAAGGCCAGAAAAGACAAGTGCATTGATATATCTACCAGCCTCGAAGTGTCCCTCACTACAATTCGGTCAATGGTTGATGCATTCTATATTATTCAGATATTTGTTCGCTTTCAAACTGCTTATGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTCGTTATAGACCCTTCAAAGATTACATCAAGGTACCTCCACAAGGACTTCTGGCTTGACCTTGTGGCTGCCCTACCTCTTCCACAGATGTTGATTTTGGCTGTGATTCCAAATCTAAAGGGGTCGGAAATGATTGCTTCAAGGCATGTTCTGCGCCTTGTTATCATTTTCCAGTACATCTTGAGGTTATATCTGATCTTCCCCCTTTCATCTCAAATAATCAAGGCAAATGGGGTAATGATGGAACAAGCTTGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCAAGTCATGTTTTAGGATCCTCCTGGTACCTCTTGGCAATTGAAAGGCAGGATGAATGTTGGAAGAAAGCTTGTAGTCTTGAGTTCCCAGATTGCCGATATCATTATCTTGATTGTCAAAGCACAAGTGACCCAGCTAGAGCAGCTTGGTTCAGATCAAGCAATCTCTCGAGTCTATGTGACGAAAACAATGATTTCTTTCACTTTGGTATTTTTGCTGATGCTGTGACTATGGAAATTACGGGCTCAAAGTTCTTAAGCAGATATTATTACTGTCTTTGGTGGGGACTGCGGAATCTCAGCTCTCTAGGACAGAATCTCCTAACAAGCACTCACGTTGCCGAGATAAATTTTGCTGTGATTATTGCAATTCTTGGTTTAGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACGTACCTGCAATCCACTACTATGCGACTGGAAGAATGGAGAATAAGAAGGACTGATACAGAACGATGGATGCATCACAGGCAGCTACCCAGTAACTTGAAGCGAAATGTACGACGCTATGAGCAGTTCAGATGGGTTGCTACTCGTGGAGTTGACGAGCAAACCATTCTCAGAGACCTTCCTGTGGATATCAGACGTGATATCAAACGCCACCTCTGTCTTAATCTAGTTCGACAAGTACCTCTATTTGATCAGATGGATGAGAGAATGCTGGATGCAATATGCGAAAGATTGAAGCCTTCTCTGTGTACTCCAGACACTCGCCTAGTTCGTGAAGGAGATCCCGTGAATGAGATGCTCTTCATTTTCCGAGGTCGGCTGGATTCTTGTACCACAAATGGTGGCCGAACTGGGTTCTTCAATTGCTGCAGAATTGGCCCCGGTGACTTCTGCGGCGAGGAGCTTTTGCCATGGGCTTTGGACCCTCGTCCAAGTGTTGTTCTTCCTTCCTCAACTCGCACAGTGAAAGCCCTCACAGAAGTGGAAGCTTTTGCCCTCATTGCTGAGGACTTGAAATTCGTAGCAGCTCAATTCCGCAGATTGCACAGCAAACAACTGAGGCACACTTTTAGGTCTCACTCGCACCAATGGAGGACATGGGCTGCTTGCTTCATACAATCAGCTTGGTTTAGATATAAGAAGAGGAAAGGGGCAAGTGAGCTCAGTAAAAAGGAGTGTCTGAAGGCCCATGTTTATGAACCAGCCATGGAACATTCCTCTGCACCTCTGCAGCCTCCTACGGGGTCAAATCTTACAATGTATGCGGCAAAATTGACAGGCAGCCCGAGGAAAGGTGGAAGCTTGCGATATGGTTCTGAACTTGACATTCTTGGTCCTTTAAGGAAGCCTCTTGAACCAGACTTCAGTGCCGAAGATAGATGA 2241 0.4449 MPXMITDALYVKYRVERLGFGRYLVEGAWDDEVKFTGSSRALWLLVDQDQFQDYLETEILTASIESPLSMPAYKMNGKHTLELEKDGTTMSLQGKELSRVFSEDYDATKKLILDPRGPRVNRWNKIFLVSCLISLFVDPLFFYLPKARKDKCIDISTSLEVSLTTIRSMVDAFYIIQIFVRFQTAYVAPSSRVFGRGELVIDPSKITSRYLHKDFWLDLVAALPLPQMLILAVIPNLKGSEMIASRHVLRLVIIFQYILRLYLIFPLSSQIIKANGVMMEQAWAGAAYNLMLYMLASHVLGSSWYLLAIERQDECWKKACSLEFPDCRYHYLDCQSTSDPARAAWFRSSNLSSLCDENNDFFHFGIFADAVTMEITGSKFLSRYYYCLWWGLRNLSSLGQNLLTSTHVAEINFAVIIAILGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTERWMHHRQLPSNLKRNVRRYEQFRWVATRGVDEQTILRDLPVDIRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPDTRLVREGDPVNEMLFIFRGRLDSCTTNGGRTGFFNCCRIGPGDFCGEELLPWALDPRPSVVLPSSTRTVKALTEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRSHSHQWRTWAACFIQSAWFRYKKRKGASELSKKECLKAHVYEPAMEHSSAPLQPPTGSNLTMYAAKLTGSPRKGGSLRYGSELDILGPLRKPLEPDFSAEDR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2794 746 CDD CAP_ED 515 644 IPR000595 -
Glsi02g2794 746 SUPERFAMILY Voltage-gated potassium channels 114 437 - -
Glsi02g2794 746 FunFam Cyclic nucleotide-gated ion channel 1 513 631 - -
Glsi02g2794 746 ProSiteProfiles cAMP/cGMP binding motif profile. 515 600 IPR000595 -
Glsi02g2794 746 SUPERFAMILY cAMP-binding domain-like 445 637 IPR018490 -
Glsi02g2794 746 Gene3D Jelly Rolls 513 633 IPR014710 -
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 478 485 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 295 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 428 437 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 178 187 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 410 421 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 PRINTS EAG/ELK/ERG potassium channel family signature 384 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi02g2794 746 Gene3D Helix hairpin bin 442 506 - -
Glsi02g2794 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 98 700 - -
Glsi02g2794 746 SMART cnmp_10 515 646 IPR000595 -
Glsi02g2794 746 Gene3D - 126 439 - -
Glsi02g2794 746 Pfam Ion transport protein 123 442 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2794 Glsi-ChrGlsi02 77245740 77250987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2794 92 744 Ion Channels AT2G28260 66.156 0.0 902