Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2793 ATGTTGGAAAAATGGCAACTCTACTCATTAGCAAGTGGGGAGTTGAGGAGCTTACGGTCTCTTCAGCCAAACGGAACGGTGCTTTATGGTCTGGTTTTCCAATTGTTGTTTGTTTTTTTGCTTATTTCCTTTCATTTCCATAATCCCCCTACAGCAGTGAGTGCACCATCTGTTGACTGTTGTGTGGGCAGCCATATCCGTTTAAGCGGCGCAACTATGTCGACCTCTGCTGCCTCCTTAGCCCTTCCTACCCTAAATTTAAAAACTCAATCGCTCTTCTATTCCAGAAAAGCTTTGTGCTCTTCCCATGGCATTTCTTCCGTTTCACTCCGACTCAATTCGAAGCCCATCTCTATCCCGGCCTCTTTCCTCCGCTTCGACAGAGCTTGTCCGAGTTTTTCATCTCACTTGGTTCCTAATGTCGCCCTTTCTTCTGAGTTCTACCAAGAAGAGGAGTTGTCGAGTGATGGAGACCAGCCCAGCTATTCCCCCGACCTCAAACTCTTCGTGGGTAATCTTCCTTTTAGCGTTGACAGTTCCCAACTCGCTGAATTGTTCGAAAGTGCTGGAAATGTAGAGATGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACGATGTCTTCCGCTGAGGAAGTTGAAGCAGCCGCTCAACAATTCAATGGCTATGAACTGGATGGGAGAGCACTGAGAGTAAATTCTGGACCTCCTCCTCGCAAGGAGAATTCACCTTTTAGAGATGCCAGAGGTGGTTCTGCTTCAGGTACAGGAAACCGTGTTCATGTGGGTAATCTTGCATGGGGTGTTGATGAATCGGCACTCGAGACAGTGTTTGGTGAACTAGGAAACGTTTTAGAAGCGAAGGTAATCTATGACAGGGAAAGCGGAAGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGCGCTGAAGAGGTCAACAGTGCTATTGAGTCCTTAAATGGGGTGGACTTGAGTGGCAGACCTATTCGAGTCTCATTGGCGGATGCTAAGCCAAGGCGTCAATTTTGA 1050 0.4667 MLEKWQLYSLASGELRSLRSLQPNGTVLYGLVFQLLFVFLLISFHFHNPPTAVSAPSVDCCVGSHIRLSGATMSTSAASLALPTLNLKTQSLFYSRKALCSSHGISSVSLRLNSKPISIPASFLRFDRACPSFSSHLVPNVALSSEFYQEEELSSDGDQPSYSPDLKLFVGNLPFSVDSSQLAELFESAGNVEMVEVIYDKMTGRSRGFGFVTMSSAEEVEAAAQQFNGYELDGRALRVNSGPPPRKENSPFRDARGGSASGTGNRVHVGNLAWGVDESALETVFGELGNVLEAKVIYDRESGRSRGFGFVTYSSAEEVNSAIESLNGVDLSGRPIRVSLADAKPRRQF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2793 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 343 IPR000504 GO:0003723
Glsi02g2793 349 SMART rrm1_1 266 339 IPR000504 GO:0003723
Glsi02g2793 349 SMART rrm1_1 167 240 IPR000504 GO:0003723
Glsi02g2793 349 SUPERFAMILY RNA-binding domain, RBD 159 265 IPR035979 GO:0003676
Glsi02g2793 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 337 IPR000504 GO:0003723
Glsi02g2793 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 238 IPR000504 GO:0003723
Glsi02g2793 349 SUPERFAMILY RNA-binding domain, RBD 249 347 IPR035979 GO:0003676
Glsi02g2793 349 FunFam Ribonucleoprotein A, chloroplastic 143 266 - -
Glsi02g2793 349 MobiDBLite consensus disorder prediction 237 264 - -
Glsi02g2793 349 CDD RRM2_NsCP33_like 266 341 - -
Glsi02g2793 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 244 IPR000504 GO:0003723
Glsi02g2793 349 Gene3D - 140 241 IPR012677 -
Glsi02g2793 349 Gene3D - 242 348 IPR012677 -
Glsi02g2793 349 PANTHER OS02G0815200 PROTEIN 115 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2793 Glsi-ChrGlsi02 77242397 77245280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2793 168 348 Eukaryotic Initiation Factors Gene Family AT3G16380 33.149 5.59e-17 80.1